Remove jellyfish deletion command

nickjcroucher · Sep 7, 2023 · 2f7b077 · 2f7b077
1 parent 406e18a
commit 2f7b077
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/python/scripts/generate_ska_alignment.py b/python/scripts/generate_ska_alignment.py
@@ -122,6 +122,5 @@ def ska_map_sequences(seq, k = None, ref = None):
 
     # Clean up
     if not args.no_cleanup:
-        subprocess.check_output('rm ' + args.out + '.skf ' + tmp_aln + ' ' + args.out + '.toweed ' \
-                                + args.out + '_mer_counts.jf',
+        subprocess.check_output('rm ' + args.out + '.skf ' + tmp_aln + ' ' + args.out + '.toweed ',
                                 shell = True)