CSH_computational_genomics_group4

Repository for all scripts and software written by Group 4 as a part of CSHL Computational Genomics course 2023

Overview of workflows

1. Chromap (ATAC seq data)
2. Peak calling with Macs2
3. Comparison of published ATAC with chromap processed ATAC
4. Other alignment processes
   • STAR
   • Salmon
   • Bowtie2
5. Differential expression analysis for RNA-seq analysis using published read counts

Dataset: