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@nimwegenLab

van Nimwegen Lab

van Nimwegen's laboratory @ Biozentrum Basel

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  1. E-Flow E-Flow Public

    vngFCM is a package designed to analyse fluocytometry data of small bacterial cells.

    R 3 2

  2. Sanity Sanity Public

    Forked from jmbreda/Sanity

    Filtering of Poison noise on a single-cell RNA-seq UMI count matrix

    MATLAB

  3. cellstates cellstates Public

    Finding gene expression states in scRNA-seq data

    Jupyter Notebook 48 6

Repositories

Showing 10 of 15 repositories
  • MiM_NikonTi Public

    Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.

    nimwegenLab/MiM_NikonTi’s past year of commit activity
    C++ 21 6 0 0 Updated Jul 8, 2024
  • RealTrace Public
    nimwegenLab/RealTrace’s past year of commit activity
    C++ 0 MPL-2.0 0 0 0 Updated May 3, 2024
  • vngMoM Public

    Tools for analysing MoMA data in R

    nimwegenLab/vngMoM’s past year of commit activity
    R 0 1 1 0 Updated May 2, 2024
  • cellstates Public

    Finding gene expression states in scRNA-seq data

    nimwegenLab/cellstates’s past year of commit activity
    Jupyter Notebook 48 MIT 6 10 0 Updated Mar 22, 2024
  • moma Public

    MoMA - the MotherMachine Analyzer

    nimwegenLab/moma’s past year of commit activity
    Java 0 0 6 0 Updated Feb 13, 2024
  • moma-model Public

    U-Net models used with MoMA

    nimwegenLab/moma-model’s past year of commit activity
    0 0 0 0 Updated Oct 1, 2023
  • moma-module Public

    Module files for setting up MoMA using Lmod

    nimwegenLab/moma-module’s past year of commit activity
    Shell 0 0 0 0 Updated Sep 28, 2023
  • moma-preprocessing Public

    Python image preprocessing for MoMA data.

    nimwegenLab/moma-preprocessing’s past year of commit activity
    Python 0 0 0 0 Updated Sep 21, 2023
  • moma-preprocessing-module Public

    Module files for setting up moma preprocessing using Lmod

    nimwegenLab/moma-preprocessing-module’s past year of commit activity
    Shell 0 0 0 0 Updated Sep 19, 2023
  • moma-batch-run Public

    A script to script the processing of large sets of growthlanes using MoMA.

    nimwegenLab/moma-batch-run’s past year of commit activity
    Python 0 0 0 0 Updated Sep 19, 2023
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