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CI: Define freesurfer home
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effigies committed Sep 25, 2024
1 parent 4b79240 commit 606e5d8
Showing 1 changed file with 4 additions and 2 deletions.
6 changes: 4 additions & 2 deletions .github/workflows/unittests.yml
Original file line number Diff line number Diff line change
Expand Up @@ -165,8 +165,10 @@ jobs:
datalad update -r --merge -d hcph-pilot_fieldmaps/
datalad get -r -J 2 -d hcph-pilot_fieldmaps/ hcph-pilot_fieldmaps/*
- name: Set FS_LICENSE variable
run: echo "FS_LICENSE=$HOME/.cache/freesurfer/license.txt" >> $GITHUB_ENV
- name: Set FreeSurfer variables
run: |
echo "FREESURFER_HOME=$HOME/.cache/freesurfer" >> $GITHUB_ENV
echo "FS_LICENSE=$HOME/.cache/freesurfer/license.txt" >> $GITHUB_ENV
- name: Install FreeSurfer's mri_robust_template
env:
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