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28 changes: 14 additions & 14 deletions .github/workflows/ci-cd.yml
Original file line number Diff line number Diff line change
Expand Up @@ -32,7 +32,7 @@ jobs:
attestations: write
id-token: write
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v5
with:
fetch-depth: 0
- uses: hynek/build-and-inspect-python-package@v2
Expand All @@ -58,13 +58,13 @@ jobs:

steps:
- name: Fetch repository
uses: actions/checkout@v4
uses: actions/checkout@v5
with:
fetch-depth: 0
- name: Install the latest version of uv
uses: astral-sh/setup-uv@v6
- name: Set up Python ${{ matrix.python-version }} on ${{ matrix.os }}
uses: actions/setup-python@v5
uses: actions/setup-python@v6
with:
python-version: ${{ matrix.python-version }}
- name: Install tox
Expand Down Expand Up @@ -97,13 +97,13 @@ jobs:
echo "RELEASE_VERSION=v3.7.1" >> $GITHUB_ENV
echo "NO_ET=TRUE" >> $GITHUB_ENV
- name: Setup Singularity
uses: actions/checkout@v4
uses: actions/checkout@v5
with:
repository: hpcng/singularity
ref: 'v3.7.1'
path: 'singularity'
- name: Setup GO
uses: actions/setup-go@v5
uses: actions/setup-go@v6
with:
go-version: '^1.13'
- name: Install OS deps
Expand All @@ -122,13 +122,13 @@ jobs:
run: |
echo ${{ github.ref }}
singularity --version
- uses: actions/checkout@v4
- uses: actions/checkout@v5
with:
fetch-depth: 0
- name: Install the latest version of uv
uses: astral-sh/setup-uv@v6
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
uses: actions/setup-python@v6
with:
python-version: ${{ matrix.python-version }}
- name: Install tox
Expand Down Expand Up @@ -158,7 +158,7 @@ jobs:
steps:
- name: Disable etelemetry
run: echo "NO_ET=TRUE" >> $GITHUB_ENV
- uses: actions/checkout@v4
- uses: actions/checkout@v5
with:
fetch-depth: 0
- name: Pull docker image
Expand Down Expand Up @@ -204,11 +204,11 @@ jobs:
# steps:
# - name: Disable etelemetry
# run: echo "NO_ET=TRUE" >> $GITHUB_ENV
# - uses: actions/checkout@v4
# - uses: actions/checkout@v5
# - name: Fetch tags
# run: git fetch --prune --unshallow
# - name: Set up Python ${{ matrix.python-version }}
# uses: actions/setup-python@v5
# uses: actions/setup-python@v6
# with:
# python-version: ${{ matrix.python-version }}
# - name: Install SGE
Expand Down Expand Up @@ -307,7 +307,7 @@ jobs:
ps aux | grep xfce4-notifyd
dbus-monitor --session &
sleep 3
- uses: actions/checkout@v4
- uses: actions/checkout@v5
with:
fetch-depth: 0
- name: Install Minconda
Expand All @@ -323,7 +323,7 @@ jobs:
conda install -c conda-forge -c MRtrix3 mrtrix3 libstdcxx-ng
mrconvert --version
- name: Set up Python
uses: actions/setup-python@v5
uses: actions/setup-python@v6
with:
python-version: '3.x'
- name: Install package
Expand All @@ -346,7 +346,7 @@ jobs:
id-token: write
steps:
- name: Download dist
uses: actions/download-artifact@v4
uses: actions/download-artifact@v5
with:
name: Packages
path: dist
Expand All @@ -359,7 +359,7 @@ jobs:
if: github.event_name == 'release'
steps:
- name: Download docs
uses: actions/download-artifact@v4
uses: actions/download-artifact@v5
with:
name: docs
path: docs-build
Expand Down
4 changes: 2 additions & 2 deletions .github/workflows/release.yml
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ jobs:
runs-on: ubuntu-latest
if: "!contains(github.event.head_commit.message, 'ci skip') && !contains(github.event.head_commit.message, 'skip ci')"
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v5

- name: Prepare repository
# Fetch full git history and tags
Expand All @@ -27,7 +27,7 @@ jobs:
run: git config --local --unset http.https://github.com/.extraheader

- name: Set up Python
uses: actions/setup-python@v5
uses: actions/setup-python@v6
with:
python-version: 3

Expand Down
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