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nixonlab

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  1. stellarscope stellarscope Public

    Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing

    Python 2 1

  2. bioinformatics_tips bioinformatics_tips Public

    General bioinformatics tips

    2

  3. snakemake_references snakemake_references Public

    Python 1

  4. scTelescope scTelescope Public

    Quantify HERVs in single-cell sequencing data

    Python 1

  5. scopetools scopetools Public

    Utility functions for working with Telescope and Stellarscope data

    R 1

  6. wcm_scu wcm_scu Public

    Notes about working with WCM SCU Resources

    Shell

Repositories

Showing 10 of 27 repositories
  • stellarscope Public

    Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing

    nixonlab/stellarscope’s past year of commit activity
    Python 2 MIT 1 8 0 Updated Sep 25, 2024
  • snakemake_references Public
    nixonlab/snakemake_references’s past year of commit activity
    Python 1 0 0 0 Updated Jul 31, 2024
  • HERV_scGTEX Public

    Quantify HERVs in single nucleus RNA-seq GTEx datasets using single-cell Telescope (scTelescope)

    nixonlab/HERV_scGTEX’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Dec 27, 2023
  • HERV_scGCB Public

    Single cell data from Germinal Center B cell paper

    nixonlab/HERV_scGCB’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Dec 11, 2023
  • TCGA_SKCM_mets Public

    The Repository to download, STAR_align, TELESCOPE and Process DE for Mets vs. Non-mets TCGA CM Bulk-RNAseq

    nixonlab/TCGA_SKCM_mets’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 24, 2023
  • TelescopeTools Public

    What the Package Does (One Line, Title Case)

    nixonlab/TelescopeTools’s past year of commit activity
    R 0 0 0 0 Updated Sep 28, 2023
  • Mets_CM_bulk Public

    Bulk RNA seq analysis for responders v non-responders

    nixonlab/Mets_CM_bulk’s past year of commit activity
    Python 0 0 0 0 Updated Aug 15, 2023
  • teabiscuit Public

    Transposable Element Analysis in BraIn, Single Cell, and Ubiquitous Tissues

    nixonlab/teabiscuit’s past year of commit activity
    0 CC-BY-4.0 1 0 0 Updated May 24, 2023
  • nixonlab.github.io Public
    nixonlab/nixonlab.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated May 12, 2023
  • StellarscopeTools Public
    nixonlab/StellarscopeTools’s past year of commit activity
    0 0 0 0 Updated May 12, 2023
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