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igv_session.STAR.xml
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igv_session.STAR.xml
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<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<Session genome="hg38" hasGeneTrack="false" hasSequenceTrack="true" locus="chr6:0-170805979" nextAutoscaleGroup="2" version="8">
<Resources>
<Resource index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_LINE.bed.gz.tbi" name="LINE" path="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_LINE.bed.gz" trackLine="useScore=1"/>
<Resource path="http://nixonlab-cluster.hopto.org/efs/projects/teabiscuit.git/02-telescope/retro.hg38.v1.gtf"/>
<Resource index="http://nixonlab-cluster.hopto.org/efs/projects/teabiscuit.git/02-telescope/ENCSR693KOP/Aligned.out.sortedByCoord.bam.bai" path="http://nixonlab-cluster.hopto.org/efs/projects/teabiscuit.git/02-telescope/ENCSR693KOP/Aligned.out.sortedByCoord.bam"/>
<Resource index="http://nixonlab-cluster.hopto.org/efs/projects/teabiscuit.git/02-telescope/gencode.v38/gencode.v38.ALL.annotation.gtf.gz.tbi" path="http://nixonlab-cluster.hopto.org/efs/projects/teabiscuit.git/02-telescope/gencode.v38/gencode.v38.ALL.annotation.gtf.gz"/>
<Resource index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_LTR.bed.gz.tbi" name="LTR" path="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_LTR.bed.gz" trackLine="useScore=1"/>
</Resources>
<Panel height="230" name="DataPanel" width="1646">
<Track altColor="0,0,178" attributeKey="gencode.v38.ALL.annotation.gtf.gz" clazz="org.broad.igv.track.FeatureTrack" color="0,0,178" featureVisibilityWindow="1000000" fontSize="10" id="http://nixonlab-cluster.hopto.org/efs/projects/teabiscuit.git/02-telescope/gencode.v38/gencode.v38.ALL.annotation.gtf.gz" name="gencode.v38" visible="true"/>
<Track altColor="0,0,178" attributeKey="LINE" clazz="org.broad.igv.track.FeatureTrack" color="0,0,178" featureVisibilityWindow="9445593" fontSize="10" id="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_LINE.bed.gz" name="RepeatMasker LINE" visible="true"/>
<Track altColor="0,0,178" attributeKey="LTR" clazz="org.broad.igv.track.FeatureTrack" color="0,0,178" featureVisibilityWindow="42518073" fontSize="10" id="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_LTR.bed.gz" name="RepeatMasker LTR" visible="true"/>
<Track altColor="0,0,178" attributeKey="retro.hg38.v1.gtf" clazz="org.broad.igv.track.FeatureTrack" color="0,0,178" colorScale="ContinuousColorScale;0.0;148.0;255,255,255;0,0,178" displayMode="EXPANDED" fontSize="10" id="http://nixonlab-cluster.hopto.org/efs/projects/teabiscuit.git/02-telescope/retro.hg38.v1.gtf" name="retro.hg38.v1" visible="true"/>
</Panel>
<Panel height="496" name="Panel1684902235181" width="1646">
<Track altColor="175,175,175" attributeKey="Aligned.out.sortedByCoord.bam Coverage" autoScale="true" clazz="org.broad.igv.sam.CoverageTrack" color="175,175,175" colorScale="ContinuousColorScale;0.0;281.0;255,255,255;175,175,175" fontSize="10" height="60" id="http://nixonlab-cluster.hopto.org/efs/projects/teabiscuit.git/02-telescope/ENCSR693KOP/Aligned.out.sortedByCoord.bam_coverage" name="Aligned.out.sortedByCoord.bam Coverage" snpThreshold="0.2" visible="true">
<DataRange baseline="0.0" drawBaseline="true" flipAxis="false" maximum="10.0" minimum="0.0" type="LINEAR"/>
</Track>
<Track attributeKey="Aligned.out.sortedByCoord.bam Junctions" clazz="org.broad.igv.sam.SpliceJunctionTrack" fontSize="10" height="60" id="http://nixonlab-cluster.hopto.org/efs/projects/teabiscuit.git/02-telescope/ENCSR693KOP/Aligned.out.sortedByCoord.bam_junctions" name="Aligned.out.sortedByCoord.bam Junctions" visible="true"/>
<Track attributeKey="Aligned.out.sortedByCoord.bam" clazz="org.broad.igv.sam.AlignmentTrack" displayMode="EXPANDED" experimentType="RNA" fontSize="10" id="http://nixonlab-cluster.hopto.org/efs/projects/teabiscuit.git/02-telescope/ENCSR693KOP/Aligned.out.sortedByCoord.bam" name="Aligned.out.sortedByCoord.bam" visible="true">
<RenderOptions colorOption="NONE"/>
</Track>
</Panel>
<Panel height="20" name="FeaturePanel" width="1646">
<Track attributeKey="Reference sequence" clazz="org.broad.igv.track.SequenceTrack" fontSize="10" id="Reference sequence" name="Reference sequence" visible="true"/>
</Panel>
<PanelLayout dividerFractions="0.2975206611570248,0.987603305785124"/>
<HiddenAttributes>
<Attribute name="DATA FILE"/>
<Attribute name="DATA TYPE"/>
<Attribute name="NAME"/>
</HiddenAttributes>
</Session>