Fix for failing ghactions

Still need change for fixing global variables
nmfs-ost · Sep 27, 2024 · bc29dbd · bc29dbd
1 parent c3cfd37
commit bc29dbd
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Showing 5 changed files with 8 additions and 8 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -29,5 +29,5 @@ Imports:
     stringr,
     tidyr,
     utils
-  Remotes:
+Remotes:
     nmfs-fish-tools/nmfspalette
diff --git a/R/plot_recruitment.R b/R/plot_recruitment.R
@@ -50,7 +50,7 @@ plot_recruitment <- function(dat,
   }
 
   if (model == "standard"){
-    output <- read.csv(dat)
+    output <- utils::read.csv(dat)
     if (scaled) {
       rec <- output |>
         dplyr::filter(label == "recruitment",

diff --git a/R/plot_spawning_biomass.R b/R/plot_spawning_biomass.R
@@ -42,7 +42,7 @@ plot_spawning_biomass <- function(dat,
   }
 
   if(model == "standard"){
-    output <- read.csv(dat)
+    output <- utils::read.csv(dat)
     sb <- output |>
       dplyr::filter(label == "spawning_biomass",
                     module_name == "DERIVED_QUANTITIES" | module_name == "t.series") |> # SS3 and BAM target module names

diff --git a/R/table_indices.R b/R/table_indices.R
@@ -10,7 +10,7 @@
 table_indices <- function(dat,
                           model = "standard"){
   if (model == "standard"){
-    output <- read.csv(dat)
+    output <- utils::read.csv(dat)
     output <- output |>
       dplyr::filter(module_name == "INDEX_2" | module_name == "t.series")
     if (any(unique(output$module_name=="INDEX_2"))) {

diff --git a/man/plot_spawning_biomass.Rd b/man/plot_spawning_biomass.Rd