added modified atomistic-parser source to requirements

default_plugins.txt

@@ -13,7 +13,7 @@ nomad-normalizer-plugin-spectra>=1.0
 nomad-normalizer-plugin-system>=1.0
 nomad-normalizer-plugin-simulation-workflow>=1.0
 nomad-parser-plugins-electronic>=1.0
-nomad-parser-plugins-atomistic>=1.0.1
+nomad-parser-plugins-atomistic @ git+https://github.com/exactlab/atomistic-parsers.git@lammps_fix_re
 nomad-parser-plugins-workflow>=1.0
 nomad-parser-plugins-database>=1.0
 # git+https://github.com/nomad-coe/nomad-parser-eelsdb.git@entry-point

requirements-plugins.txt

@@ -43,7 +43,6 @@ diffpy-structure==3.2.2   # via diffsims, kikuchipy, orix
 diffsims==0.6.0           # via kikuchipy, pyxem
 dill==0.3.9               # via hyperspy, lmfit
 docstring-parser==0.16    # via nomad-lab, -c requirements-dev.txt
-eelsdbconverter @ git+https://github.com/nomad-coe/nomad-parser-eelsdb.git@788eb03dc71ef9b164e2a5ccb9c0209b546f5c38  # via -r default_plugins.txt
 elasticsearch==7.17.12    # via elasticsearch-dsl, -c requirements-dev.txt
 elasticsearch-dsl==7.4.0  # via nomad-lab, -c requirements-dev.txt
 entrypoints==0.4          # via ipyparallel
@@ -148,7 +147,7 @@ nomad-normalizer-plugin-soap==1.0  # via -r default_plugins.txt
 nomad-normalizer-plugin-spectra==1.0  # via -r default_plugins.txt
 nomad-normalizer-plugin-system==1.0  # via -r default_plugins.txt
 nomad-openbis==1.0.0      # via nomad-external-eln-integrations
-nomad-parser-plugins-atomistic==1.0.2  # via -r default_plugins.txt
+nomad-parser-plugins-atomistic @ git+https://github.com/exactlab/atomistic-parsers.git@77f863adac389c7f5fb47de0d8d5b483ea988e79  # via -r default_plugins.txt
 nomad-parser-plugins-database==1.0  # via -r default_plugins.txt
 nomad-parser-plugins-electronic==1.0.2  # via -r default_plugins.txt
 nomad-parser-plugins-simulation==1.0.2  # via nomad-parser-plugins-atomistic, nomad-parser-plugins-electronic
@@ -169,7 +168,7 @@ orix==0.13.2              # via diffsims, kikuchipy, pyxem
 orjson==3.10.11           # via h5grove, nomad-lab, -c requirements-dev.txt
 packaging==24.2           # via dask, deprecation, hyperspy, ipykernel, jupyter-server, jupyterlab, jupyterlab-server, lazy-loader, matplotlib, mdanalysis, nbconvert, pint, plotly, pooch, scikit-image, silx, tables, xarray, xraydb, -c requirements-dev.txt
 palettable==3.3.3         # via pymatgen, -c requirements-dev.txt
-pandas==2.2.3             # via eelsdbconverter, ifes-apt-tc-data-modeling, nomad-lab, nomad-openbis, panedr, pymatgen, pynxtools, radioactivedecay, xarray, -c requirements-dev.txt
+pandas==2.2.3             # via ifes-apt-tc-data-modeling, nomad-lab, nomad-openbis, panedr, pymatgen, pynxtools, radioactivedecay, xarray, -c requirements-dev.txt
 pandocfilters==1.5.1      # via nbconvert
 panedr==0.8.0             # via nomad-lab, nomad-parser-plugins-atomistic, -c requirements-dev.txt
 parmed==4.3.0             # via nomad-lab, -c requirements-dev.txt
@@ -229,7 +228,7 @@ pyzeo==0.1.6              # via nomad-porous-materials
 pyzmq==26.2.0             # via ipykernel, ipyparallel, jupyter-client, jupyter-console, jupyter-server
 radioactivedecay==0.5.1   # via ifes-apt-tc-data-modeling
 rdkit==2023.9.5           # via perovskite-solar-cell-database, -c requirements-dev.txt
-requests==2.31.0          # via eelsdbconverter, hyperspy, jupyterlab-server, nomad-lab, nomad-openbis, pooch, pymatgen, python-keycloak, requests-toolbelt, rfc3161ng, -c requirements-dev.txt
+requests==2.31.0          # via hyperspy, jupyterlab-server, nomad-lab, nomad-openbis, pooch, pymatgen, python-keycloak, requests-toolbelt, rfc3161ng, -c requirements-dev.txt
 requests-toolbelt==1.0.0  # via python-keycloak, -c requirements-dev.txt
 rfc3161ng==2.1.3          # via nomad-lab, -c requirements-dev.txt
 rfc3339-validator==0.1.4  # via jsonschema, -c requirements-dev.txt