by Nick Nelson npnelson3@gmail.com
topas2matlab(filename,DoseGridType) converts csv-binned TOPAS outputs to a Matlab dose and uncertainty arrays where the DoseGridType is either Cylindrical or Rectilinear. The function will evauluate the dimensions of the dose grid (1D, 2D, or 3D voxels) and places the respective TOPAS values into a 1D, 2D, or 3D array. topas2matlab_bin(filename) converts binary-binned TOPAS outputs to a Matlab array with the help of readBinHeader(headerFile) which simply reads in the amount of bins and their widths in X, Y, and Z.
% For csv-binned data
file = 'TestData/3D.csv';
[dose, uncertainty] = topas2matlab(file,'Rectilinear');
% For binary-binned data
headerFile = 'TestData/Dij.binheader';
doseFile = 'TestData/Dij.bin';
[Dose] = readBinHeader(headerFile);
[Dose.Data] = topas2matlab_bin(doseFile);