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Nick Predey edited this page Mar 1, 2018
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Welcome to the Genetic Ancestry Tool wiki!
GOAL: Build a wrapper that automates the merging of any set of genotype files with HapMap genotypes, performs PCA, and plots the results
Input: PLINK .bed/.bim/.fam files from 1000 Genomes Project and cohort of interest
Output: genotype principal components, plots, “bad” examples and how to fix them
Software Tools: PLINK EIGENSTRAT Python
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