Skip to content

References

Jump to bottom
Eaton edited this page Jan 15, 2019 · 1 revision

References

  1. Boutz PL, et al. (2007) A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons. Genes Dev 21(13):1636-1652.

  2. Cline MS, et al. (2007) Integration of biological networks and gene expression data using Cytoscape. Nat Protoc 2(10):2366-2382.

  3. Gardina PJ, et al. (2006) Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array. BMC Genomics 7:325.

  4. Hubbard TJ, et al. (2007) Ensembl 2007. Nucleic Acids Res 35(Database issue):D610-617.

  5. Irizarry RA, et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4(2):249-64.

  6. Karolchik D, et al. (2008) The UCSC Genome Browser Database: 2008 update. Nucleic Acids Res 36(Database issue):D773-779.

  7. Krek A, et al. (2005) Combinatorial microRNA target predictions. Nat Genet 37:495-500.

  8. Lockstone HE (2011) Exon array data analysis using Affymetrix power tools and R statistical software. Brief Bioinform 12(6):634-644.

  9. Nestorowa S, et al. (2016) A single-cell resolution map of mouse hematopoietic stem and progenitor cell differentiation. Blood 128(8):e20-31.

  10. Purdom E, et al. (2008) FIRMA: a method for detection of alternative splicing from exon array data. Bioinformatics 24(15):1707-1714.

  11. Salomonis N, et al. (2007) GenMAPP 2: new features and resources for pathway analysis. BMC Bioinformatics 8:217.

  12. Salomonis N, et al. (2009) Alternative Splicing in the Differentiation of Human Embryonic Stem Cells into Cardiac Precursors. PLoS Comput Biol 5(11):e1000553.

  13. Salomonis N, et al. (2010) Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation. PNAS 107(23):10514–10519.

  14. Shen S, et al. (2010) MADS+: discovery of differential splicing events from Affymetrix exon junction array data. Bioinformatics 26(2):268-269.

  15. Singer E, et al. (2015) Reactive oxygen species-mediated therapeutic response and resistance in glioblastoma. Cell Death Dis 6:e1601.

  16. Srinivasan K, et al. (2005) Detection and measurement of alternative splicing using splicing-sensitive microarrays. Methods 37(4):345-359.

  17. Sugnet CW, et al. (2006) Unusual intron conservation near tissue-regulated exons found by splicing microarrays. PLoS Comput Biol 2(1):e4.

  18. Ule J, et al. (2005) Nova regulates brain-specific splicing to shape the synapse. Nat Genet 37(8):844-852.

  19. van Iersel MP, et al. (2008) Presenting and exploring biological pathways with PathVisio. BMC Bioinformatics 9:399.

  20. Wheeler R (2002) A method of consolidating and combining EST and mRNA alignments to a genome to enumerate supported splice variants. Algorithms in Bioinformatics: Second International Workshop, Springer Berlin / Heidelberg Volume 2452/2002:201–209.

  21. Xing Y, et al. (2008) MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays. Rna 14(8):1470-1479.

  22. Xu W, et al. (2011) Human transcriptome array for high-throughput clinical studies. PNAS 108(9):3707-3712.

  23. Yamashita Y, et al. (2012) Four parameters increase the sensitivity and specificity of the exon array analysis and disclose 25 novel aberrantly spliced exons in myotonic dystrophy. J Hum Genet 57:368-374.

Clone this wiki locally