Merge pull request #80 from nutriverse/v0.3.1.9000

V0.3.1.9000
nutriverse · Oct 19, 2019 · cbc67b5 · cbc67b5
2 parents bc65299 + dcccbdc
commit cbc67b5
Show file tree

Hide file tree

Showing 58 changed files with 521 additions and 147 deletions.
diff --git a/NEWS.md b/NEWS.md
@@ -2,11 +2,13 @@
 
 Fourth release of `zscorer`. In this release:
 
+* fixed an issue with wrong URLs in README documentation.
+
 * fixed an issue when calculating BMI-for-age where measurements are 0 resulting in error rather than providing an NA value. Now, when values for measurements are 0, the zscore produced is NA.
 
 * updated MUAC for age to allow for calculation for children up to 19 years old based on article by Jay Berkeley and colleagues.
 
-* updated Shiny app
+* updated Shiny app and added a vignette showing how to use the Shiny app
 
 * updated documentation to reflect editions and additions
 

diff --git a/README.Rmd b/README.Rmd
@@ -390,11 +390,11 @@ knitr::include_graphics("man/figures/zscorerApp.png")
 
 ## References
 
-[^1]: World Health Organization (WHO). (2006). WHO Child Growth Standards: Length/height-for-age, weight-for-age, weight-for-length, weight-for-height and body mass index-for-age: Methods and development. [https://doi.org/10.1037/e569412006-008](https://doi.org/10.1037/e569412006-008)
+[^1]: World Health Organization. (2006). WHO child growth standards : length/height-for-age, weight-for-age, weight-for-length, weight -for-height and body mass index-for-age : methods and development. World Health Organization. [https://apps.who.int/iris/handle/10665/43413](https://apps.who.int/iris/handle/10665/43413)
 
-[^2]: World Health Organization (WHO). (2007). WHO Child Growth Standards: Head circumference-for-age, arm circumference-for-age, triceps skinfold-for-age and subscapular skinfold-for-age: methods and development. Geneva: World Health Organization.
+[^2]: World Health Organization. (2007). WHO child growth standards : head circumference-for-age, arm circumference-for-age, triceps skinfold-for-age and subscapular skinfold-for-age : methods and development. World Health Organization. [https://apps.who.int/iris/handle/10665/43706](https://apps.who.int/iris/handle/10665/43706)
 
-[^3]: Onis, M. De, Onyango, A. W., Borghi, E., Siyam, A., & Siekmann, J. (2007). Development of a WHO growth reference for school-aged children and adolescents. 043497(July), 660–667. [https://doi.org/10.2471/BLT](https://doi.org/10.2471/BLT).
+[^3]: de Onis M. Development of a WHO growth reference for school-aged children and adolescents. Bull World Health Org. 2007;85: 660–667. [doi:10.2471/BLT.07.043497](https://doi.org/10.2471/blt.07.043497)
 
 [^4]: Mramba L, Ngari M, Mwangome M, Muchai L, Bauni E, Walker AS, et al. A growth reference for mid upper arm circumference for age among school age children and adolescents, and validation for mortality: growth curve construction and longitudinal cohort study. BMJ. 2017;: j3423–8. [doi:10.1136/bmj.j3423](https://doi.org/10.1136/bmj.j3423)
 

diff --git a/README.md b/README.md
@@ -521,20 +521,21 @@ current device as shown below:
 
 ## References
 
-1.  World Health Organization (WHO). (2006). WHO Child Growth Standards:
-    Length/height-for-age, weight-for-age, weight-for-length,
-    weight-for-height and body mass index-for-age: Methods and
-    development. <https://doi.org/10.1037/e569412006-008>
-
-2.  World Health Organization (WHO). (2007). WHO Child Growth Standards:
-    Head circumference-for-age, arm circumference-for-age, triceps
-    skinfold-for-age and subscapular skinfold-for-age: methods and
-    development. Geneva: World Health Organization.
-
-3.  Onis, M. De, Onyango, A. W., Borghi, E., Siyam, A., & Siekmann, J.
-    (2007). Development of a WHO growth reference for school-aged
-    children and adolescents. 043497(July), 660–667.
-    <https://doi.org/10.2471/BLT>.
+1.  World Health Organization. (2006). WHO child growth standards :
+    length/height-for-age, weight-for-age, weight-for-length, weight
+    -for-height and body mass index-for-age : methods and development.
+    World Health Organization.
+    <https://apps.who.int/iris/handle/10665/43413>
+
+2.  World Health Organization. (2007). WHO child growth standards : head
+    circumference-for-age, arm circumference-for-age, triceps
+    skinfold-for-age and subscapular skinfold-for-age : methods and
+    development. World Health Organization.
+    <https://apps.who.int/iris/handle/10665/43706>
+
+3.  de Onis M. Development of a WHO growth reference for school-aged
+    children and adolescents. Bull World Health Org. 2007;85: 660–667.
+    [doi:10.2471/BLT.07.043497](https://doi.org/10.2471/blt.07.043497)
 
 4.  Mramba L, Ngari M, Mwangome M, Muchai L, Bauni E, Walker AS, et
     al. A growth reference for mid upper arm circumference for age

diff --git a/cran-comments.md b/cran-comments.md
@@ -1,11 +1,13 @@
 ## Release summary
-Fourth release of `zscorer`. In this release:
+Fourth release of `zscorer`. This is a re-submission to address issues noted by CRAN. In this release:
+
+* fixed an issue with wrong URLs in README documentation.
 
 * fixed an issue when calculating BMI-for-age where measurements are 0 resulting in error rather than providing an NA value. Now, when values for measurements are 0, the zscore produced is NA.
 
 * updated MUAC for age to allow for calculation for children up to 19 years old based on article by Jay Berkeley and colleagues.
 
-* updated Shiny app
+* updated Shiny app and added a vignette showing how to use the Shiny app
 
 * updated documentation to reflect editions and additions
 

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/articles/anthropometry.html b/docs/articles/anthropometry.html
diff --git a/docs/articles/calculate_zscore.html b/docs/articles/calculate_zscore.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/articles/legacy_functions.html b/docs/articles/legacy_functions.html
diff --git a/docs/articles/using-shiny-app.html b/docs/articles/using-shiny-app.html