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NWChem Version 4.6 Release Notes | ||
(Also available at | ||
http://www.emsl.pnl.gov/docs/nwchem/release-notes/release.notes.4.6.html) | ||
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NOTE: These release notes are not a substitute for reading the User Manual! | ||
They are meant to give a thumbnail sketch of the new capabilities and bug | ||
fixes that are available in NWChem Version 4.6. When there is a conflict | ||
between the release notes and the User Manual, the User Manual takes | ||
precedence. | ||
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The changes for version 4.6 are listed at the bottom of this file. | ||
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Several new major capabilities are available in NWChem, including several new | ||
modules. The new modules are: | ||
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o CCSD(T) and CCSD[T] for closed- and open-shell systems with Abelian symmetry | ||
(contributed by Alex Auer, University of Waterloo) | ||
o EOM-CCSD, EOM-CCSDT, EOM-CCSDTQ for excitation energies, transition | ||
moments, and excited-state dipole moments of closed- and open-shell | ||
systems | ||
o CCSD, CCSDT, CCSDTQ for dipole moments of closed- and open-shell | ||
systems | ||
o Constraints module that is capable of freezing atom positions and | ||
restraining bond lengths during optimization. | ||
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For each of these capabilities, the user is referred to the User | ||
Manual for more information. | ||
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Additional major additions to the capabilities include: | ||
o van Leeuwen-Baerends potential for DFT and TDDFT | ||
o Casida-Salahub asymptotic correction for DFT and TDDFT | ||
o A new self-contained asymptotic correction for B3LYP DFT and TDDFT | ||
o A new density functional TPSS, energy term only | ||
o Added the functional HCTH/407+ | ||
o A new keyword in TCE to allow/suppress recomputing the Fock | ||
matrix. This is useful for one-component relativistic CI/CC/MBPT/EOM-CC | ||
o Two new I/O algorithms (DRA and GA+EAF) in TCE | ||
o QHOP proton hopping method in MD | ||
o Charmm force field (Urey-Bradley) | ||
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Again, for each of these capabilities, the user is referred to the User Manual | ||
for more information. | ||
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Listed below are the other major and many minor changes for each module | ||
with significant changes. These descriptions are somewhat terse and more | ||
information is generally available in the User Manual. | ||
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Basis: | ||
o BUG FIX: Iodine Stuttgart Large Core ECP to conform to the one | ||
published by Bergner et. al. (Mol. Phys. 1993) | ||
o Definition of PERMANENT_DEF_DIR, SCRATCH_DEF_DIR | ||
NWCHEM_BASIS_LIBRARY_PATH at compile time is gone. These | ||
environmental variables will be ignored. Compilation automatically | ||
stops if the NWCHEM_TOP name is longer than 65 chars. | ||
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BLAS: | ||
o Introduce faster dgemm (with more aggressive blocking) | ||
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CCSD(T): | ||
o Improved memory allocation | ||
o BUG FIX: TOL2E convergence parameter is now properly handled | ||
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COSMO: | ||
o BUG FIX: Mass was used for radius in ECP calculations. | ||
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DFT: | ||
o Better handling of exponential underflow speeds up certain | ||
platforms. | ||
o Implemented GA mirroring to address network latency issues | ||
(activated by set dft:xcreplicated t) | ||
o Speed improvement by introducing more aggressive screening for | ||
basis functions evaluations and grid partitioning weights | ||
o Added pstat profiling | ||
o In-core coulomb algorithm: improved output | ||
o XC grid restructuring for getting fault-tolerance in gradients; | ||
added "grid nodisk" keyword for skipping I/O operation for grid | ||
o Increased limit for grid size | ||
o BUG FIX: The final vectors are now printed when requested | ||
o BUG FIX: Bq atoms with different charges are no longer considered to | ||
be different atom types | ||
o BUG FIX: Fix associated with VWN functional | ||
o BUG FIX: d4d group was causing loss of weights normalization | ||
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Geometry: | ||
o BUG FIX: geometries containing bqs were causing the autosym | ||
module to crash | ||
o BUG FIX: autosym was not correctly detecting the degeneracy of the | ||
moments of inertia | ||
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Hessian: | ||
o BUG FIX: Fixes associated with linear dependencies. | ||
o CPHF SCF residual error termination is now set to 1d-2 (was 1d-4) | ||
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Input: | ||
o Default memory increased from 200 mb to 400 mb | ||
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Integrals: | ||
o Performances improvements in the McMurchie-Davidson algorithm | ||
o BUG FIX: increased limpair value to address "getmem memory | ||
overflow" problem | ||
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MD: | ||
o Molecule-based periodic boundary conditions | ||
o Revised file formats for frg, sgm and top files | ||
o Radius of gyration and diffusion coefficient are optional properties | ||
o Reduced memory allocation for work arrays | ||
o Prefetching using non-blocking communication | ||
o Option to aid in membrane setup | ||
o Trajectories recorded in multiple files | ||
o Redesign cell-cell list to avoid most common 'lbbl errors' | ||
o Multiple parameter databases | ||
o Mixed parameter definitions | ||
o Improved performance in prepare module for very large systems | ||
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MP2: | ||
o Added scratchdisk keyword to limit disk usage on a per process base | ||
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NBO: | ||
o BUG FIX: title writing turned off since requires risky character | ||
to integer conversion that breaks many compilers | ||
o BUG FIX: Intel compiler 8.0 was crashing on Hollerith characters | ||
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Numerical gradient: | ||
o BUG FIX: atoms list was corrupted when symmetry is on | ||
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NWPW: | ||
o Pseudoptential library: NWCHEM_NWPW_LIBRARY_PATH is gone in a | ||
similar fashion to what happened to Gaussian basis | ||
library. Compilation automatically stops if the NWCHEM_TOP name is | ||
longer than 65 chars. | ||
o BUG FIX: ELF generation in pspw_dplot fixed. | ||
o Mulliken projection now uses pseudoatomic orbitals | ||
o Automatic grid conversion | ||
o Preliminary version of HGH pseudopotentials | ||
o PSPW: virtual orbital calculations | ||
o Car-Parrinello: geometry constraints | ||
o BAND: Monkhorst-Pack k-point generation | ||
o BAND: LMBFGS minimizer | ||
o PAW: free space boundary conditions | ||
o Performances improvements in the non-local pseudopotential | ||
and orthogonalility calculations | ||
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Properties: | ||
o Ecce support added for NMR properties | ||
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QMD: | ||
o Released restriction on theory type that can be used in the computation. | ||
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Rtdb: | ||
o Added option to store rtdb in memory (-DDB_INMEM). This option | ||
creates a dummy .db file, therefore restart will not work. | ||
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SELCI: | ||
o Now runs on 64 bit platforms | ||
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SCF: | ||
o BUG FIX: Linear dependency is accounted for in vector projections | ||
o BUG FIX: vectors "lock" was causing hang-ups in certain parallel | ||
runs. | ||
o Got rid of hard-wired limit of 10,000 basis functions. | ||
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TDDFT: | ||
o BUG FIX: Fixed S**2 expectation value when frozen core is used | ||
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Util: | ||
o BUG FIX: made the interface to LSF to estimate wall-time | ||
remaining more fault-tolerant | ||
o I/O on system with inhomogeneous disk sizes is made more robust | ||
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New Platform added: | ||
o Mac OSX 10.3 with GNU (gcc and g77 3.4) and IBM (xlf) compilers | ||
o Cray X1 | ||
o Opteron Linux with GNU, Portland Group and PathScale compilers. | ||
o Linux ppc64 with IBM compilers | ||
o INTERIX platform using the Windows Services For Unix | ||
(http://www.microsoft.com/windows/sfu/default.asp) | ||
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New compiler support: | ||
o Intel fortran compiler version 8.0 for IA32 and IA64 | ||
o Use of g77 version 3.3 (3.3.1, 3.3.2 and 3.3.3) is supported, but | ||
not recommended. We had to put in place version fix for this | ||
compiler (e.g. http://gcc.gnu.org/bugzilla/show_bug.cgi?id=13037) | ||
g77 3.1.x 3.2.x and 3.4 are known to work | ||
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