Fix bug with last numpy and integer management #12
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI tests | |
| # CI tests ran every time new code is pushed to the repo | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches-ignore: | |
| - 'dependabot*' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| detect-ci-trigger: | |
| name: detect ci trigger | |
| runs-on: ubuntu-latest | |
| if: | | |
| github.repository == 'obidam/pyxpcm' | |
| && (github.event_name == 'push' || github.event_name == 'pull_request') | |
| outputs: | |
| triggered: ${{ steps.detect-trigger.outputs.trigger-found }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 2 | |
| - uses: xarray-contrib/ci-trigger@v1.2 | |
| id: detect-trigger | |
| with: | |
| keyword: "[skip-ci]" | |
| scikit: | |
| # CI tests for environments with requirements in pinned versions, using Scikit-learn backend | |
| # All commits must pass this | |
| name: Scikit-Learn - Pinned - Py${{matrix.python-version}} - ${{ matrix.os }} | |
| needs: detect-ci-trigger | |
| runs-on: ${{ matrix.os }} | |
| if: needs.detect-ci-trigger.outputs.triggered == 'false' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| continue-on-error: ${{ matrix.experimental }} | |
| strategy: | |
| max-parallel: 12 | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8"] | |
| os: ["ubuntu-latest", "macos-latest"] | |
| experimental: [false] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set environment variables | |
| run: | | |
| echo "CONDA_ENV_FILE=ci/requirements/py${{matrix.python-version}}-all-pinned-scikitlearn.yml" >> $GITHUB_ENV | |
| echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
| - name: Setup micromamba | |
| uses: mamba-org/provision-with-micromamba@v15 | |
| with: | |
| environment-file: ${{ env.CONDA_ENV_FILE }} | |
| environment-name: pyxpcm-tests | |
| cache-env: true | |
| cache-env-key: "${{runner.os}}-${{runner.arch}}-py${{matrix.python-version}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
| extra-specs: | | |
| python=${{matrix.python-version}} | |
| conda | |
| # We only want to install this on one run, because otherwise we'll have | |
| # duplicate annotations. | |
| - name: Install error reporter | |
| if: ${{ matrix.os }} == 'ubuntu-latest' and ${{ matrix.python-version }} == '3.8' | |
| run: | | |
| python -m pip install pytest-github-actions-annotate-failures | |
| - name: Version info | |
| run: | | |
| conda info | |
| conda list | |
| # - name: Lint with flake8 | |
| # run: | | |
| # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| pytest -ra -v -s --durations=10 --cov=./ --cov-config=.coveragerc --cov-report xml:cov.xml --cov-report term-missing | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: ./cov.xml | |
| flags: unittests | |
| name: codecov-github | |
| fail_ci_if_error: false | |
| env_vars: RUNNER_OS,PYTHON_VERSION | |
| daskml: | |
| # CI tests for environments with requirements in pinned versions, using Dask-ML backend | |
| # All commits must pass this | |
| name: Dask-ML - Pinned - Py${{matrix.python-version}} - ${{ matrix.os }} | |
| needs: detect-ci-trigger | |
| runs-on: ${{ matrix.os }} | |
| if: needs.detect-ci-trigger.outputs.triggered == 'false' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| continue-on-error: ${{ matrix.experimental }} | |
| strategy: | |
| max-parallel: 12 | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8"] | |
| os: ["ubuntu-latest", "macos-latest"] | |
| experimental: [true] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set environment variables | |
| run: | | |
| echo "CONDA_ENV_FILE=ci/requirements/py${{matrix.python-version}}-all-pinned-daskml.yml" >> $GITHUB_ENV | |
| echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
| - name: Setup micromamba | |
| uses: mamba-org/provision-with-micromamba@v15 | |
| with: | |
| environment-file: ${{ env.CONDA_ENV_FILE }} | |
| environment-name: pyxpcm-tests | |
| cache-env: true | |
| cache-env-key: "${{runner.os}}-${{runner.arch}}-py${{matrix.python-version}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
| extra-specs: | | |
| python=${{matrix.python-version}} | |
| conda | |
| - name: Version info | |
| run: | | |
| conda info | |
| conda list | |
| # - name: Lint with flake8 | |
| # run: | | |
| # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| pytest -ra -v -s --durations=10 --cov=./ --cov-config=.coveragerc --cov-report xml:cov.xml --cov-report term-missing | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: ./cov.xml | |
| flags: unittests | |
| name: codecov-github | |
| fail_ci_if_error: false | |
| env_vars: RUNNER_OS,PYTHON_VERSION |