Weekly auto update

oganm · Dec 15, 2024 · 26b4ef7 · 26b4ef7
1 parent 2fa982b
commit 26b4ef7
Show file tree

Hide file tree

Showing 22 changed files with 126 additions and 128 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,13 +1,13 @@
 Package: geneSynonym
 Type: Package
 Title: Quick Access to Gene Synonym Information
-Version: 1.7.24.12.8
+Version: 1.7.24.12.15
 Depends: R(>= 3.1)
 Imports: 
     utils (>= 3.4.0),
     magrittr (>= 1.5)
 Suggests: testthat
-Date: 2024-12-08
+Date: 2024-12-15
 Authors@R: person("Ogan", "Mancarci", email = "ogan.mancarci@gmail.com", role = c("aut", "cre"))
 BugReports: https://github.com/oganm/geneSynonym/issues
 URL: https://github.com/oganm/geneSynonym

diff --git a/data-raw/syno10090 b/data-raw/syno10090
@@ -14236,7 +14236,7 @@
 68525|Evc2|1110017L09Rik|Lbn|limbin
 68526|Gpr155|1110017O10Rik|DEPDC3|F730029F15Rik|LYCHOS|PGR22
 68527|Ucma|1110017I16Rik|Grp
-68528|Smim6|1110017F19Rik|Eln
+68528|Erln|1110017F19Rik|Eln|Smim6
 68529|1110019B22Rik|0610006I13Rik
 68531|1110020A21Rik|2600015P10Rik
 68533|Mphosph6|1110001M01Rik
@@ -16798,7 +16798,7 @@
 73204|3110056K07Rik|4921536K06Rik
 73205|C9orf72|3110043O21Rik|Dennd9
 73208|3110083C13Rik
-73212|3110082I17Rik|C7orf50
+73212|Chlsn|3110082I17Rik|C7orf50
 73216|B9d1os|3110043A19Rik
 73218|Sppl2b|3110056O03Rik|PSL1
 73219|3110080E11Rik
@@ -18585,7 +18585,7 @@
 75890|1700003P14Rik|1700030O10Rik|4930584L06Rik
 75892|4930578I07Rik
 75893|4930587E11Rik|4930523E13Rik|Gm44188
-75894|Adal|4930578F03Rik
+75894|Adal|4930578F03Rik|Mapda
 75896|4930587A21Rik
 75900|4930566D17Rik
 75901|Dcp1a|1110066A22Rik|4930568L04Rik|D14Ertd817e|Mitc1|SMIF
@@ -21830,7 +21830,7 @@
 101122|Rpusd3
 101123|D6Mgi31
 101142|Itfg2|2700050P07Rik
-101148|Bmt2|B630005N14Rik
+101148|Samtor|B630005N14Rik|Bmt2
 101185|Pot1a|1500031H18Rik|Pot1
 101187|Parp11|5330431N24Rik|ARTD11|HIN1L|PARP-11
 101190|AI853106
@@ -23536,7 +23536,7 @@
 108320|Mmv21|Mmv-21
 108321|Hrs1|Hrs-1
 108328|Mtv4|Mtv-4
-108332|Pad6
+108332|Padis6|Pad6
 108333|Emv36|Emv-36
 108334|Emv51|Emv-51
 108338|Mtv21|Mtv-21
@@ -24532,7 +24532,7 @@
 110054|Gt10
 110055|Sas2|Sas-2
 110056|Tks
-110057|Pad2
+110057|Padis2|Pad2
 110058|Syt17|Bk|sytXVII
 110059|Lmr1
 110061|Gsh3|Gsh-3
@@ -24541,10 +24541,10 @@
 110065|Soa
 110066|Tcrd|Tcrdelta
 110067|Tcrg|TCRGV1S1|TCRGV2S1|TCRGV3S1|TCRGV5S3
-110069|Pad3
+110069|Padis3|Pad3
 110070|Tubb-rs
-110071|Pad5
-110072|Pad4
+110071|Padis5|Pad5
+110072|Padis4|Pad4
 110074|Dut|5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase
 110075|Bmp3|9530029I04Rik
 110076|Emb-rs3
@@ -25408,7 +25408,7 @@
 111379|Mtv3|Mtv-18|Mtv-3
 111380|Mtv6|Mls-3|Mls3|Mtv-6
 111381|Mtv9|Mtv-9
-111382|Pad1|Pad-1
+111382|Padis1|Pad-1|Pad1
 111383|Mar1|L2a
 111384|Emv11|Akv-1|Emv-11
 111385|Mtv33|Mtv-33
@@ -28716,7 +28716,7 @@
 219072|Haus4|9430093H08Rik|D14Ertd500e
 219094|Khnyn|6330555F21|9130227C08Rik|Kiaa0323|mKIAA0323
 219102|Gm4819|EG219102
-219103|Cenpj|4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4
+219103|Cpap|4932437H03Rik|Cenpj|Gm81|LAP|LIP1|Sas4
 219105|Zmym5|9830124H08Rik
 219114|Ska3|F630043A04Rik
 219131|Phf11a|4933417L10Rik|Phf11|Phf11l
@@ -29721,7 +29721,7 @@
 232406|BC035044
 232408|Klrb1f|A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f
 232409|Clec2e|Clra|clr-a
-232413|Clec12a|CLL-1|D230024O04|KLRL1|Micl
+232413|Clec12a|CLL-1|D230024O04|KLRL1|Micl|mKLRL1|mMICL
 232414|Clec9a|9830005G06Rik|DNGR-1
 232415|Klrh1|Gm156
 232426|5530400C23Rik|GRP
@@ -71015,7 +71015,7 @@
 115490128|Gm52781
 115490129|Gm52782
 115490130|Gm52783
-115490131|Tmem217rt|Gm42517|Tmem271
+115490131|Tmem271rt|Gm42517|Tmem217rt|Tmem271
 115490132|Gm52784
 115490133|Gm52785
 115490134|Gm52786

diff --git a/data-raw/syno10116 b/data-raw/syno10116
@@ -58,7 +58,7 @@
 24237|C6
 24239|Cacna1c|RATIVS302
 24240|Cad
-24241|Calca|CAL6|CGRP|Cal1|Calc|RATCAL6|calcitonin
+24241|Calca|CAL6|CGRP|CGRP1|Cal1|Calc|RATCAL6|calcitonin
 24242|Calm1|CaMI|Calm|Cam1
 24244|Calm3|CaMIII|Cam3|Camc|RNCAMIII
 24245|Camk2b|Ck2b
@@ -2992,7 +2992,7 @@
 83584|Casp6|Mch2
 83585|Gda|Cypin
 83586|Usf1
-83588|Kcns3
+83588|Kcns3|Kv9.3
 83589|Apba1|Mint1
 83610|Apba2|Mint2
 83611|Apba3|Mint3
@@ -4399,7 +4399,7 @@
 171516|Akr1c3|Akr1c18
 171517|Gpc2
 171518|Cyp2c22|CYPIIC70|Cyp2c70|P-450Md
-171519|Calcb|CGRP-II
+171519|Calcb|CGRP-II|CGRP2
 171521|Cyp2c13|Cyp2c38
 171522|Cyp2d4|Cyp2d18|Cyp2d22|Cyp2d4v1|Cyp2d4v2|Cyp2d6
 171525|Polk|Dinb1
@@ -17564,7 +17564,7 @@
 415025|Rcrg1-ps13
 415026|Nerg-ps7
 415027|2619a1-ps1|2619a1|2619a1_ps1
-415028|2619a1_ps2|2626a1a2
+415028|2619a1-ps2|2619a1_ps2|2626a1a2
 415029|2641a1
 415030|Rcrg1-ps14
 415031|2646a1a2

diff --git a/data-raw/syno6239 b/data-raw/syno6239
@@ -326,7 +326,7 @@
 171955|F53F10.7
 171956|unc-108
 171957|mpc-2
-171958|F53F10.2
+171958|azin-1
 171959|F53F10.1
 171960|gsp-4
 171961|T03F1.6
@@ -646,7 +646,7 @@
 172303|chn-1
 172304|T09B4.2
 172305|pigv-1
-172306|T05E7.3
+172306|wshc-5
 172307|T05E7.4
 172308|vet-1
 172309|T05E7.1
@@ -933,7 +933,7 @@
 172612|mei-1
 172613|abts-1
 172614|F52B5.2
-172615|F52B5.3
+172615|ythc-2
 172616|cep-1
 172617|rpl-23A.2
 172618|C34B7.1
@@ -1078,7 +1078,7 @@
 172766|C17E4.2
 172767|marc-3
 172768|pabp-2
-172769|C17E4.6
+172769|vps-72
 172770|C17E4.10
 172771|mec-8
 172772|F46A9.1
@@ -2833,7 +2833,7 @@
 174681|metr-1
 174682|R03D7.2
 174683|tceb-3
-174684|R03D7.8
+174684|spe-57
 174685|ptp-3
 174686|col-81
 174687|ram-2
@@ -3606,7 +3606,7 @@
 175533|ccdc-55
 175534|C16C10.4
 175535|hrde-1
-175536|C16C10.2
+175536|utp-11
 175537|C16C10.1
 175538|lars-1
 175539|R74.2
@@ -4493,7 +4493,7 @@
 176481|rabx-5
 176482|mrpl-22
 176483|hpr-9
-176484|Y39A1A.9
+176484|meic-1
 176485|dhs-11
 176486|orc-1
 176487|orc-4
@@ -5465,7 +5465,7 @@
 177550|emc-6
 177551|nhr-8
 177552|F33D4.6
-177553|C50F7.6
+177553|pzls-1
 177554|C50F7.5
 177555|sucg-1
 177556|clx-1
@@ -5836,7 +5836,7 @@
 177942|ced-5
 177943|tax-6
 177945|cal-4
-177946|T07G12.5
+177946|svct-1
 177947|T07G12.8
 177948|zim-2
 177949|efn-2
@@ -7315,7 +7315,7 @@
 179536|Y42A5A.1
 179537|erfa-3
 179538|math-33
-179539|scb-1
+179539|nhj-1
 179540|mboa-2
 179541|atp-5
 179542|C06H2.2
@@ -7377,7 +7377,7 @@
 179599|zip-10
 179600|lgc-44
 179601|ape-1
-179602|W05E10.1
+179602|mfsd-8.2
 179603|ceh-32
 179604|tre-3
 179605|daf-11
@@ -8385,7 +8385,7 @@
 180720|dgk-2
 180721|rhi-1
 180722|spr-3
-180723|C07A12.7
+180723|tmyb-1
 180724|pdi-2
 180725|nhr-35
 180726|C07A12.2
@@ -8676,7 +8676,7 @@
 181025|F26A10.2
 181026|pcca-1
 181027|dhs-29
-181028|F27D9.2
+181028|mfsd-8.5
 181029|stn-2
 181030|unc-18
 181031|clik-2
@@ -8986,7 +8986,7 @@
 181357|ttx-3
 181358|rsd-3
 181359|C34E11.2
-181360|tag-241
+181360|mtcl-1
 181361|F54F7.3
 181362|mes-1
 181363|Y62H9A.3
@@ -9182,7 +9182,7 @@
 181565|tmem-184
 181566|atrn-1
 181567|tsp-8
-181568|C05G5.2
+181568|wshc-2
 181569|C05G5.3
 181570|sucl-1
 181571|C05G5.5
@@ -11318,7 +11318,7 @@
 184052|ugt-43
 184053|F01D4.3
 184054|srb-17
-184055|F01D4.8
+184055|cyts-1
 184056|F01D5.2
 184057|F01D5.3
 184058|F01D5.5
@@ -11528,7 +11528,7 @@
 184282|str-108
 184283|str-111
 184284|F10B5.2
-184285|F10B5.3
+184285|btbz-2
 184286|F10C1.1
 184287|dmd-5
 184288|F10C1.t1
@@ -13135,7 +13135,7 @@
 186125|oac-32
 186126|srsx-8
 186127|col-64
-186128|F52F12.5
+186128|spe-58
 186129|F52G3.3
 186130|F52G3.4
 186131|F52H2.3
@@ -13227,7 +13227,7 @@
 186223|cpar-1
 186224|F54C8.6
 186225|F54C9.7
-186226|F54C9.11
+186226|rabi-1
 186227|F54D1.1
 186228|col-127
 186230|gnrr-1
@@ -13408,7 +13408,7 @@
 186429|str-118
 186430|npr-39
 186431|nhr-192
-186432|F57A8.7
+186432|mfsd-8.4
 186433|str-9
 186434|F57B1.1
 186435|F57B1.5
@@ -15737,7 +15737,7 @@
 189138|srh-271
 189139|sknr-1
 189140|grl-22
-189142|W03A5.6
+189142|dlgr-1
 189143|W03B1.1
 189144|W03B1.5
 189146|oac-51
@@ -16611,7 +16611,7 @@
 190216|Y53F4B.17
 190217|Y53F4B.18
 190218|Y53F4B.19
-190219|Y53F4B.21
+190219|wshc-4
 190220|Y53F4B.23
 190221|Y53F4B.24
 190222|Y53F4B.26
@@ -16630,7 +16630,7 @@
 190239|Y53G8AM.7
 190240|Y53G8AR.1
 190241|Y53G8AR.5
-190242|mfsd-8
+190242|mfsd-8.3
 190243|Y53G8B.1
 190244|Y53G8B.3
 190246|clec-100
@@ -17532,7 +17532,7 @@
 191345|ZK546.7
 191347|gst-30
 191348|mboa-5
-191349|ZK550.2
+191349|mfsd-8.1
 191350|phyh-1
 191351|ZK563.2
 191353|ZK563.t1
@@ -46024,7 +46024,7 @@
 24104959|T28B8.11
 24104960|T28H11.31
 24104961|linc-117
-24104962|VH15N14R.1
+24104962|smrn-1
 24104963|linc-148
 24104964|VM106R.1
 24104965|W01A11.21
@@ -46488,7 +46488,7 @@
 29991191|K05F1.13
 29991192|Y41C4A.11
 30314033|sre-10
-30314034|T05A7.12
+30314034|ptp-10
 30314035|T05A7.13
 30928523|T04C12.33
 32091596|B0244.16