Major dependencies update (#2449)

Major dependencies update (#2449)

---------

Co-authored-by: Vignesh Hari <14056798+vigneshhari@users.noreply.github.com>
Co-authored-by: vigneshhari <vichuhari100@gmail.com>

.github/dependabot.yml

@@ -10,9 +10,13 @@ updates:
     schedule:
       interval: "weekly"
     groups:
-      boto:
+      all-dependencies:
         patterns:
-          - "boto*"
+          - "*"
+    ignore:
+      - dependency-name: "redis-om"
+      - dependency-name: "pydantic"
+      - dependency-name: "fhir.resources"
 
   - package-ecosystem: "docker"
     directory: "/docker"

.github/workflows/docs.yml

@@ -23,11 +23,11 @@ jobs:
 
       - uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.12"
           cache: 'pipenv'
 
       - name: Install pipenv
-        run: curl https://raw.githubusercontent.com/pypa/pipenv/master/get-pipenv.py | python
+        run: pip install pipenv
 
       - name: Install dependencies
         run: pipenv sync --categories "docs"

Pipfile

@@ -5,15 +5,14 @@ name = "pypi"
 
 [packages]
 argon2-cffi = "==23.1.0"
-authlib = "==1.3.1"
-boto3 = "==1.35.0"
+authlib = "==1.3.2"
+boto3 = "==1.35.19"
 celery = "==5.4.0"
-django = "==4.2.15"
+django = "==5.1.1"
 django-environ = "==0.11.2"
-django-cors-headers = "==4.3.1"
-django-filter = "==24.2"
+django-cors-headers = "==4.4.0"
+django-filter = "==24.3"
 django-maintenance-mode = "==0.21.1"
-django-model-utils = "==4.5.1"
 django-queryset-csv = "==1.1.0"
 django-ratelimit = "==4.1.0"
 django-redis = "==5.4.0"
@@ -26,51 +25,49 @@ dry-rest-permissions = "==0.1.10"
 drf-nested-routers = "==0.94.1"
 drf-spectacular = "==0.27.2"
 "fhir.resources" = "==6.5.0"
-gunicorn = "==22.0.0"
+gunicorn = "==23.0.0"
 healthy-django = "==0.1.0"
-jsonschema = "==4.22.0"
+jsonschema = "==4.23.0"
 jwcrypto = "==1.5.6"
 newrelic = "==9.13.0"
-pillow = "==10.3.0"
+pillow = "==10.4.0"
 psycopg = { extras = ["c"], version = "==3.1.19" }
 pycryptodome = "==3.20.0"
 pydantic = "==1.10.15" # fix for fhir.resources < 7.0.2
-pyjwt = "==2.8.0"
+pyjwt = "==2.9.0"
 python-slugify = "==8.0.4"
 pywebpush = "==2.0.0"
 redis = { extras = ["hiredis"], version = "==5.0.5" } # constraint for redis-om
-redis-om = "==0.3.1"
+redis-om = "==0.3.1" # > 0.3.1 broken with pydantic < 2
 requests = "==2.32.3"
-sentry-sdk = "==2.13.0"
-whitenoise = "==6.6.0"
+sentry-sdk = "==2.14.0"
+whitenoise = "==6.7.0"
 
 [dev-packages]
-black = "==24.4.2"
-boto3-stubs = { extras = ["s3", "boto3"], version = "==1.35.0" }
-coverage = "==7.5.3"
-debugpy = "==1.8.1"
+black = "==24.8.0"
+boto3-stubs = { extras = ["s3", "boto3"], version = "==1.35.19" }
+coverage = "==7.6.1"
+debugpy = "==1.8.5"
 django-coverage-plugin = "==3.1.0"
-django-debug-toolbar = "==4.4.2"
 django-extensions = "==3.2.3"
-django-silk = "==5.1.0"
-django-stubs = "==5.0.2"
-djangorestframework-stubs = "==3.15.0"
-factory-boy = "==3.3.0"
+django-silk = "==5.2.0"
+djangorestframework-stubs = "==3.15.1"
+factory-boy = "==3.3.1"
 flake8 = "==7.1.1"
 freezegun = "==1.5.1"
-ipython = "==8.25.0"
+ipython = "==8.27.0"
 isort = "==5.13.2"
-mypy = "==1.10.0"
-pre-commit = "==3.7.1"
+mypy = "==1.11.2"
+pre-commit = "==3.8.0"
 requests-mock = "==1.12.1"
 tblib = "==3.0.0"
-watchdog = "==4.0.1"
-werkzeug = "==3.0.3"
+watchdog = "==5.0.2"
+werkzeug = "==3.0.4"
 
 [docs]
-furo = "==2024.5.6"
-sphinx = "==7.3.7"
-myst-parser = "==3.0.1"
+furo = "==2024.8.6"
+sphinx = "==8.0.2"
+myst-parser = "==4.0.0"
 
 [requires]
-python_version = "3.11"
+python_version = "3.12"

care/abdm/models/consent.py

@@ -42,14 +42,12 @@ def default_to_time():
         default=list, validators=[JSONFieldSchemaValidator(CARE_CONTEXTS)]
     )
 
-    status = models.CharField(
-        choices=Status.choices, max_length=20, default=Status.REQUESTED.value
-    )
+    status = models.CharField(choices=Status, max_length=20, default=Status.REQUESTED)
     purpose = models.CharField(
-        choices=Purpose.choices, max_length=20, default=Purpose.CARE_MANAGEMENT.value
+        choices=Purpose, max_length=20, default=Purpose.CARE_MANAGEMENT
     )
     hi_types = ArrayField(
-        models.CharField(choices=HealthInformationTypes.choices, max_length=20),
+        models.CharField(choices=HealthInformationTypes, max_length=20),
         default=list,
     )
 
@@ -61,14 +59,14 @@ def default_to_time():
     )
 
     access_mode = models.CharField(
-        choices=AccessMode.choices, max_length=20, default=AccessMode.VIEW.value
+        choices=AccessMode, max_length=20, default=AccessMode.VIEW
     )
     from_time = models.DateTimeField(null=True, blank=True, default=default_from_time)
     to_time = models.DateTimeField(null=True, blank=True, default=default_to_time)
     expiry = models.DateTimeField(null=True, blank=True, default=default_expiry)
 
     frequency_unit = models.CharField(
-        choices=FrequencyUnit.choices, max_length=20, default=FrequencyUnit.HOUR.value
+        choices=FrequencyUnit, max_length=20, default=FrequencyUnit.HOUR
     )
     frequency_value = models.PositiveSmallIntegerField(
         default=1, validators=[MinValueValidator(1)]

care/facility/admin.py

@@ -40,6 +40,7 @@
 )
 
 
+@admin.register(Building)
 class BuildingAdmin(admin.ModelAdmin):
     autocomplete_fields = ["facility"]
     search_fields = ["name"]
@@ -93,43 +94,51 @@ def queryset(self, request, queryset):
         return queryset.filter(state__name=self.value())
 
 
+@admin.register(Facility)
 class FacilityAdmin(DjangoQLSearchMixin, admin.ModelAdmin):
     search_fields = ["name"]
     list_filter = [StateFilter, DistrictFilter]
     djangoql_completion_enabled_by_default = True
 
 
+@admin.register(FacilityStaff)
 class FacilityStaffAdmin(DjangoQLSearchMixin, admin.ModelAdmin):
     autocomplete_fields = ["facility", "staff"]
     djangoql_completion_enabled_by_default = True
 
 
+@admin.register(FacilityCapacity)
 class FacilityCapacityAdmin(DjangoQLSearchMixin, admin.ModelAdmin):
     autocomplete_fields = ["facility"]
     djangoql_completion_enabled_by_default = True
 
 
+@admin.register(FacilityVolunteer)
 class FacilityVolunteerAdmin(DjangoQLSearchMixin, admin.ModelAdmin):
     autocomplete_fields = ["facility", "volunteer"]
     djangoql_completion_enabled_by_default = True
 
 
+@admin.register(Inventory)
 class InventoryAdmin(DjangoQLSearchMixin, admin.ModelAdmin):
     autocomplete_fields = ["facility", "item"]
     djangoql_completion_enabled_by_default = True
 
 
+@admin.register(InventoryItem)
 class InventoryItemAdmin(DjangoQLSearchMixin, admin.ModelAdmin):
     search_fields = ["name", "description"]
     djangoql_completion_enabled_by_default = True
 
 
+@admin.register(Room)
 class RoomAdmin(DjangoQLSearchMixin, admin.ModelAdmin):
     autocomplete_fields = ["building"]
     search_fields = ["building", "num"]
     djangoql_completion_enabled_by_default = True
 
 
+@admin.register(StaffRoomAllocation)
 class StaffRoomAllocationAdmin(DjangoQLSearchMixin, admin.ModelAdmin):
     autocomplete_fields = ["staff", "room"]
     djangoql_completion_enabled_by_default = True
@@ -140,6 +149,7 @@ class AmbulanceDriverInline(DjangoQLSearchMixin, admin.TabularInline):
     djangoql_completion_enabled_by_default = True
 
 
+@admin.register(Ambulance)
 class AmbulanceAdmin(admin.ModelAdmin):
     search_fields = ["vehicle_number"]
     inlines = [
@@ -148,33 +158,40 @@ class AmbulanceAdmin(admin.ModelAdmin):
     djangoql_completion_enabled_by_default = True
 
 
+@admin.register(AmbulanceDriver)
 class AmbulanceDriverAdmin(DjangoQLSearchMixin, admin.ModelAdmin):
     autocomplete_fields = ["ambulance"]
     djangoql_completion_enabled_by_default = True
 
 
+@admin.register(PatientRegistration)
 class PatientAdmin(DjangoQLSearchMixin, admin.ModelAdmin):
     list_display = ("id", "name", "year_of_birth", "gender")
     djangoql_completion_enabled_by_default = True
 
 
+@admin.register(PatientSample)
 class PatientSampleAdmin(DjangoQLSearchMixin, admin.ModelAdmin):
     djangoql_completion_enabled_by_default = True
 
 
+@admin.register(PatientExternalTest)
 class PatientExternalTestAdmin(admin.ModelAdmin):
     pass
 
 
+@admin.register(PatientInvestigation)
 class PatientTestAdmin(admin.ModelAdmin):
     pass
 
 
+@admin.register(PatientInvestigationGroup)
 class PatientTestGroupAdmin(admin.ModelAdmin):
     pass
 
 
 class ExportCsvMixin:
+    @admin.action(description="Export Selected")
     def export_as_csv(self, request, queryset):
         queryset = FacilityUser.objects.all().values(*FacilityUser.CSV_MAPPING.keys())
         return render_to_csv_response(
@@ -183,14 +200,14 @@ def export_as_csv(self, request, queryset):
             field_serializer_map=FacilityUser.CSV_MAKE_PRETTY,
         )
 
-    export_as_csv.short_description = "Export Selected"
-
 
+@admin.register(FacilityUser)
 class FacilityUserAdmin(DjangoQLSearchMixin, admin.ModelAdmin, ExportCsvMixin):
     djangoql_completion_enabled_by_default = True
     actions = ["export_as_csv"]
 
 
+@admin.register(FacilityFlag)
 class FacilityFlagAdmin(admin.ModelAdmin):
     class FacilityFeatureFlagForm(forms.ModelForm):
         flag = forms.ChoiceField(
@@ -204,34 +221,15 @@ class Meta:
     form = FacilityFeatureFlagForm
 
 
-admin.site.register(Facility, FacilityAdmin)
-admin.site.register(FacilityStaff, FacilityStaffAdmin)
-admin.site.register(FacilityCapacity, FacilityCapacityAdmin)
-admin.site.register(FacilityVolunteer, FacilityVolunteerAdmin)
-admin.site.register(FacilityUser, FacilityUserAdmin)
-admin.site.register(Building, BuildingAdmin)
-admin.site.register(Room, RoomAdmin)
-admin.site.register(StaffRoomAllocation, StaffRoomAllocationAdmin)
-admin.site.register(InventoryItem, InventoryItemAdmin)
-admin.site.register(Inventory, InventoryAdmin)
 admin.site.register(InventoryLog)
-admin.site.register(Ambulance, AmbulanceAdmin)
-admin.site.register(AmbulanceDriver, AmbulanceDriverAdmin)
-admin.site.register(PatientRegistration, PatientAdmin)
-admin.site.register(PatientSample, PatientSampleAdmin)
 admin.site.register(Disease)
 admin.site.register(FacilityInventoryUnit)
 admin.site.register(FacilityInventoryUnitConverter)
 admin.site.register(FacilityInventoryItem)
 admin.site.register(FacilityInventoryItemTag)
-admin.site.register(PatientExternalTest, PatientExternalTestAdmin)
-admin.site.register(PatientInvestigation, PatientTestAdmin)
-admin.site.register(PatientInvestigationGroup, PatientTestGroupAdmin)
 admin.site.register(AssetBed)
 admin.site.register(Asset)
 admin.site.register(Bed)
 admin.site.register(PatientConsent)
 admin.site.register(FileUpload)
 admin.site.register(PatientConsultation)
-
-admin.site.register(FacilityFlag, FacilityFlagAdmin)

care/facility/migrations/0001_initial_squashed.py

@@ -6913,7 +6913,7 @@ class Migration(migrations.Migration):
         migrations.AddConstraint(
             model_name="patientconsultation",
             constraint=models.CheckConstraint(
-                check=models.Q(
+                condition=models.Q(
                     models.Q(_negated=True, suggestion="R"),
                     ("referred_to__isnull", False),
                     ("referred_to_external__isnull", False),
@@ -6925,7 +6925,7 @@ class Migration(migrations.Migration):
         migrations.AddConstraint(
             model_name="patientconsultation",
             constraint=models.CheckConstraint(
-                check=models.Q(
+                condition=models.Q(
                     ("admitted", False),
                     ("admission_date__isnull", False),
                     _connector="OR",
@@ -6996,7 +6996,7 @@ class Migration(migrations.Migration):
         migrations.AddConstraint(
             model_name="facilitylocalgovtbody",
             constraint=models.CheckConstraint(
-                check=models.Q(
+                condition=models.Q(
                     ("local_body__isnull", False),
                     ("district__isnull", False),
                     _connector="OR",

care/facility/migrations/0393_rename_diagnosis_patientconsultation_deprecated_diagnosis_and_more.py

@@ -174,7 +174,7 @@ def populate_consultation_diagnosis(apps, schema_editor):
         migrations.AddConstraint(
             model_name="consultationdiagnosis",
             constraint=models.CheckConstraint(
-                check=models.Q(
+                condition=models.Q(
                     ("is_principal", False),
                     models.Q(
                         ("verification_status__in", ["refuted", "entered-in-error"]),

care/facility/migrations/0443_remove_patientconsultation_consent_records_and_more.py

@@ -181,7 +181,7 @@ def reverse_migrate(apps, schema_editor):
         migrations.AddConstraint(
             model_name="patientconsent",
             constraint=models.CheckConstraint(
-                check=models.Q(
+                condition=models.Q(
                     models.Q(("type", 2), _negated=True),
                     ("patient_code_status__isnull", False),
                     _connector="OR",
@@ -192,7 +192,7 @@ def reverse_migrate(apps, schema_editor):
         migrations.AddConstraint(
             model_name="patientconsent",
             constraint=models.CheckConstraint(
-                check=models.Q(
+                condition=models.Q(
                     ("type", 2), ("patient_code_status__isnull", True), _connector="OR"
                 ),
                 name="patient_code_status_not_required",