website: use /docs folder

Makefile

@@ -207,17 +207,11 @@ full: proto install prune_deps add_deps tidy lint test website webdash
 
 # Build the website
 website:
-	@find ./config -name '*.txt' -o -name '*.yaml' | xargs -I % cp % ./website/static/funnel-config-examples/
 	@go get github.com/spf13/hugo
 	hugo --source ./website
-	#
-	# NOTE! release the website requires manual steps.
-	# TODO there's more here
-	# https://gohugo.io/tutorials/github-pages-blog/#deployment-via-gh-pages-branch
 
 # Serve the Funnel website on localhost:1313
 website-dev:
-	@find ./config -name '*.txt' -o -name '*.yaml' -exec cp {} website/static/funnel-config-examples/ \;
 	@go get github.com/spf13/hugo
 	hugo --source ./website -w server
 

docs/categories/index.xml

@@ -0,0 +1,14 @@
+<?xml version="1.0" encoding="utf-8" standalone="yes" ?>
+<rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom">
+  <channel>
+    <title>Categories on Funnel</title>
+    <link>https://ohsu-comp-bio.github.io/funnel/categories/</link>
+    <description>Recent content in Categories on Funnel</description>
+    <generator>Hugo -- gohugo.io</generator>
+    <language>en-us</language>
+
+	<atom:link href="https://ohsu-comp-bio.github.io/funnel/categories/index.xml" rel="self" type="application/rss+xml" />
+
+
+  </channel>
+</rss>

docs/css/darcula.css

@@ -0,0 +1,77 @@
+/*
+
+Darcula color scheme from the JetBrains family of IDEs
+
+*/
+
+
+.hljs {
+  display: block;
+  overflow-x: auto;
+  padding: 0.5em;
+  background: #2b2b2b;
+}
+
+.hljs {
+  color: #bababa;
+}
+
+.hljs-strong,
+.hljs-emphasis {
+  color: #a8a8a2;
+}
+
+.hljs-bullet,
+.hljs-quote,
+.hljs-link,
+.hljs-number,
+.hljs-regexp,
+.hljs-literal {
+  color: #6896ba;
+}
+
+.hljs-code,
+.hljs-selector-class {
+  color: #a6e22e;
+}
+
+.hljs-emphasis {
+  font-style: italic;
+}
+
+.hljs-keyword,
+.hljs-selector-tag,
+.hljs-section,
+.hljs-attribute,
+.hljs-name,
+.hljs-variable {
+  color: #cb7832;
+}
+
+.hljs-params {
+  color: #b9b9b9;
+}
+
+.hljs-string {
+  color: #6a8759;
+}
+
+.hljs-subst,
+.hljs-type,
+.hljs-built_in,
+.hljs-builtin-name,
+.hljs-symbol,
+.hljs-selector-id,
+.hljs-selector-attr,
+.hljs-selector-pseudo,
+.hljs-template-tag,
+.hljs-template-variable,
+.hljs-addition {
+  color: #e0c46c;
+}
+
+.hljs-comment,
+.hljs-deletion,
+.hljs-meta {
+  color: #7f7f7f;
+}

docs/css/dark.css

@@ -0,0 +1,63 @@
+/*
+
+Dark style from softwaremaniacs.org (c) Ivan Sagalaev <Maniac@SoftwareManiacs.Org>
+
+*/
+
+.hljs {
+  display: block;
+  overflow-x: auto;
+  padding: 0.5em;
+  background: #444;
+}
+
+.hljs-keyword,
+.hljs-selector-tag,
+.hljs-literal,
+.hljs-section,
+.hljs-link {
+  color: white;
+}
+
+.hljs,
+.hljs-subst {
+  color: #ddd;
+}
+
+.hljs-string,
+.hljs-title,
+.hljs-name,
+.hljs-type,
+.hljs-attribute,
+.hljs-symbol,
+.hljs-bullet,
+.hljs-built_in,
+.hljs-addition,
+.hljs-variable,
+.hljs-template-tag,
+.hljs-template-variable {
+  color: #d88;
+}
+
+.hljs-comment,
+.hljs-quote,
+.hljs-deletion,
+.hljs-meta {
+  color: #777;
+}
+
+.hljs-keyword,
+.hljs-selector-tag,
+.hljs-literal,
+.hljs-title,
+.hljs-section,
+.hljs-doctag,
+.hljs-type,
+.hljs-name,
+.hljs-strong {
+  font-weight: bold;
+}
+
+.hljs-emphasis {
+  font-style: italic;
+}