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Okinawa Institute of Science & Technology

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  1. Usiigaci Usiigaci Public

    Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning

    Jupyter Notebook 194 68

  2. LaTeX-templates LaTeX-templates Public

    Graduate School LaTeX templates for Lab rotation proposal + report, OIST beamer and Thesis + thesis proposal

    63 56

  3. optinist optinist Public

    calcium imaging pipeline tool

    TypeScript 37 13

  4. DenseObjectDetection DenseObjectDetection Public

    Detection of objects in an image using segmentation

    Python 34 14

  5. DenseObjectAnnotation DenseObjectAnnotation Public

    Tool to annotate objects in images.

    JavaScript 18 8

  6. course-scheduler course-scheduler Public

    Python code to generate course schedules for the Graduate School

    Python 12 6

Repositories

Showing 10 of 164 repositories
  • emevo Public

    Simluate Embodied Evolution of Agents

    oist/emevo’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 0 Updated Dec 24, 2024
  • VisualStimulation Public

    matlab gui for vstim with psychophysics toolbox

    oist/VisualStimulation’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Dec 23, 2024
  • LaTeX-template-lab-rotation-proposal Public

    LaTeX Template for the OIST Lab Rotation Proposal

    oist/LaTeX-template-lab-rotation-proposal’s past year of commit activity
    TeX 0 MIT 2 0 0 Updated Dec 23, 2024
  • LaTeX-template-lab-rotation-report Public

    LaTeX Template for the OIST Lab Rotation Report

    oist/LaTeX-template-lab-rotation-report’s past year of commit activity
    TeX 0 MIT 2 0 0 Updated Dec 23, 2024
  • NEXTNetR Public
    oist/NEXTNetR’s past year of commit activity
    C++ 0 GPL-3.0 0 0 0 Updated Dec 20, 2024
  • NEXTNet Public

    C++ implementation of the NEXT-Net algorithm for efficient simulation of epidemics on complex networks

    oist/NEXTNet’s past year of commit activity
    C++ 0 LGPL-3.0 0 0 0 Updated Dec 20, 2024
  • LuscombeU_nfcore_pairgenomealign_fork Public Forked from nf-core/pairgenomealign

    Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results

    oist/LuscombeU_nfcore_pairgenomealign_fork’s past year of commit activity
    Nextflow 0 MIT 2 0 0 Updated Dec 19, 2024
  • BioinfoUgrp Public

    OIST Bioinfo user group

    oist/BioinfoUgrp’s past year of commit activity
    Shell 7 2 1 0 Updated Dec 19, 2024
  • plessy_pairwiseGenomeComparison Public

    Draft workflow for pairwise genome comparison. We recommend you use the new nf-core version instead: https://nf-cor.e/pairgenomealign

    oist/plessy_pairwiseGenomeComparison’s past year of commit activity
    Nextflow 5 3 2 0 Updated Dec 18, 2024
  • LuscombeU_stlpreprocess Public

    Download and pre-process genomes for the Scrambling in the Tree of Life project

    oist/LuscombeU_stlpreprocess’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Dec 18, 2024
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