OMERO Marshal

Extensible marshaling code to transform various OMERO objects into dictionaries which can then be marshalled using JSON or alternative encodings.

Requirements

• OMERO.py 5.6 or newer
• Python 3.6 or newer

Development Installation

1. Clone the repository:

   git clone git@github.com:ome/omero-marshal.git
   

2. Set up a virtualenv (http://www.pip-installer.org/) and activate it:

   curl -O -k https://raw.github.com/pypa/virtualenv/master/virtualenv.py
   python virtualenv.py omero-marshal
   source omero-marshal/bin/activate
   pip install -r requirements.txt
   pip install -r requirements-dev.txt
   

Running Tests

Using py.test to run the unit tests:

py.test tests/unit/

License

This project, similar to many Open Microscopy Environment (OME) projects, is licensed under the terms of the GNU General Public License (GPL) v2 or later.

Reference

• https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2015-01/ome.html
• https://docs.openmicroscopy.org/latest/omero/developers/Model/Units.html
• https://docs.openmicroscopy.org/latest/omero/developers/Model/KeyValuePairs.html