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1. cooler cooler Public

   A cool place to store your Hi-C

   Python 224 58

2. cooltools cooltools Public

   The tools for your .cool's

   Jupyter Notebook 155 52

3. pairtools pairtools Public

   Extract 3D contacts (.pairs) from sequencing alignments

   Python 116 36

4. bioframe bioframe Public

   Genomic interval operations on Pandas DataFrames

   Python 183 34

5. distiller-nf distiller-nf Public

   A modular Hi-C mapping pipeline

   Groovy 99 27

6. polychrom polychrom Public

   Chromosome polymer simulations and in silico capture experiments

   Python 51 17