NIAB workshop Agenda

Frederic Boudon & Christophe Pradal

Monday 15th November

• Welcome

• Workshop introduction

• Short presentation of the participants

• Introduction to 3D shoot and root plant modelling

• Short Introduction to OpenAlea

Lunch

• Topological and Geometrical representation of Plant Architecture
• 3D Phenotyping of Plant Architecture
  • Course + Tutorials

Tuesday 16th November

• Simulation of Plant Architecture using L-Systems
  • Full-day Hands-on courses and tutorials with L-Py

Wednesday 17th November

• Personal modelling projects

Installation

Conda install

Conda Installation

Conda is a package manager that can be installed on Linux, Windows, and Mac. If you have not yet installed conda on your computer, follow these instructions:

Conda Installation. Follow instructions for Miniconda.

Conda Download. Use the Python 3.8 based installation.

Install Mamba

For fastest installation, install Mamba:

conda install mamba -c conda-forge

Get environment.yml

The file is available in the github repository. Clone it or retrieve it. Then, create a new conda environment:

mamba env create -f environment.yml

Activate the env

conda activate lpytraining