build for ubuntu22.04 backend and libraries needed for CASA, to impro…

…ve re-build stability of casa containers in the future

science-containers/Dockerfiles/casa/ubuntu22.04/Dockerfile

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+FROM ubuntu:22.04
+
+#This Dockerfile creates a local version of the Ubuntu 22.04 OS, along with
+# standard software/libraries that CASA versions need to run.  This container
+# is stored on harbor for to assist with long term stability
+
+
+RUN apt update
+RUN apt upgrade -y
+
+RUN apt install -y libsm6 libxi6 libxrender1 libxrandr2 \
+        libxfixes3 libxcursor1 libxinerama1 fontconfig \
+        imagemagick xterm
+RUN apt install -y perl autoconf autoconf graphviz xz-utils \
+        gfortran libcanberra-gtk-module libsnl-dev
+RUN apt install -y libxslt1.1 xauth xorg xvfb dbus
+
+RUN apt install -y libfuse2 
+
+RUN apt install -y gcc libgsl-dev libfftw3-dev
+
+RUN apt install -y sssd acl
+
+RUN apt install -y tcsh
+
+RUN apt install -y wget
+
+
+

science-containers/Dockerfiles/casa/ubuntu22.04/Makefile

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+
+VERSIONS = \
+	22.04
+
+
+DOCKER_REPO_BASE=images.canfar.net/skaha/ubuntu
+
+.PHONY: build clean run 
+
+all: build
+
+build: 
+	@- $(foreach V,$(VERSIONS), \
+		docker build -t ${DOCKER_REPO_BASE}:$(V) .; \
+    	)
+
+clean:
+	@- $(foreach V,$(VERSIONS), \
+	  docker rmi ${DOCKER_REPO_BASE}:$(V) ; \
+	)
+
+
+upload: build
+	@- $(foreach V,$(VERSIONS), \
+	  docker push ${DOCKER_REPO_BASE}:$(V) ; \
+	)
+clean_all: clean
+upload_all: upload

science-containers/Dockerfiles/casa/ubuntu22.04/init.sh

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+#!/bin/bash
+
+echo "INIT START"
+echo "sourcing admit_start.sh"
+source /opt/admit/admit_start.sh
+echo "setting up analysisUtils path"
+echo 'import sys' > $HOME/.casa/init.py
+echo 'sys.path.append("/opt/casa/analysisUtils/analysis_scripts/")' >> $HOME/.casa/init.py
+echo 'import analysisUtils as au' >> $HOME/.casa/init.py
+echo 'import analysisUtils as AU' >> $HOME/.casa/init.py
+echo "INIT DONE"

science-containers/Dockerfiles/casa/ubuntu22.04/nsswitch.conf

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+#
+# /etc/nsswitch.conf
+#
+# An example Name Service Switch config file. This file should be
+# sorted with the most-used services at the beginning.
+#
+# The entry '[NOTFOUND=return]' means that the search for an
+# entry should stop if the search in the previous entry turned
+# up nothing. Note that if the search failed due to some other reason
+# (like no NIS server responding) then the search continues with the
+# next entry.
+#
+# Valid entries include:
+#
+#	nisplus			Use NIS+ (NIS version 3)
+#	nis			Use NIS (NIS version 2), also called YP
+#	dns			Use DNS (Domain Name Service)
+#	files			Use the local files
+#	db			Use the local database (.db) files
+#	compat			Use NIS on compat mode
+#	hesiod			Use Hesiod for user lookups
+#	[NOTFOUND=return]	Stop searching if not found so far
+#
+
+# To use db, put the "db" in front of "files" for entries you want to be
+# looked up first in the databases
+#
+# Example:
+#passwd:    db files nisplus nis
+#shadow:    db files nisplus nis
+#group:     db files nisplus nis
+
+passwd:     sss files
+shadow:     files sss
+group:      sss files
+
+#hosts:     db files nisplus nis dns
+hosts:      files dns
+
+# Example - obey only what nisplus tells us...
+#services:   nisplus [NOTFOUND=return] files
+#networks:   nisplus [NOTFOUND=return] files
+#protocols:  nisplus [NOTFOUND=return] files
+#rpc:        nisplus [NOTFOUND=return] files
+#ethers:     nisplus [NOTFOUND=return] files
+#netmasks:   nisplus [NOTFOUND=return] files
+
+bootparams: nisplus [NOTFOUND=return] files
+
+ethers:     files
+netmasks:   files
+networks:   files
+protocols:  files
+rpc:        files
+services:   files
+
+netgroup:   nisplus
+
+publickey:  nisplus
+
+automount:  files nisplus
+aliases:    files nisplus

science-containers/Dockerfiles/casa/ubuntu22.04/update-data.patch

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+#!/usr/bin/perl
+##
+## move rsync point from svn.cv.nrao.edu to casa.nrao.edu
+##
+use File::Find;
+
+if ( scalar(@ARGV) < 1 ) { die "$0 requires path to CASA installation to be patched..." }
+if ( scalar(@ARGV) > 1 ) { die "$0 requires only one parameter which is the path to CASA installation to be patched..." }
+
+unless ( -d $ARGV[0] ) { die "$0 requires path to CASA installation (which should be a directory) to be patched..." }
+
+sub locate_script {
+    if ( -f $_ && $_ eq "update-data" ) {
+        print "substituting $File::Find::dir/$_\n";
+        open( CONTENTS, "< $_" );
+        my @contents = <CONTENTS>;
+        close( CONTENTS );
+        open( CONTENTS, "> $_" );
+        foreach my $x ( @contents ) {
+            $x =~ s@(?:rsync://svn.cv.nrao.edu/casa-data|rsync://casa.nrao.edu/casa-data)@rsync://casa-rsync.nrao.edu/casa-data@g;
+            print CONTENTS "$x";
+        }
+        close( CONTENTS );
+    }
+}
+
+find( { wanted => \&locate_script }, $ARGV[0] );