Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

TASK-7330 - Hortonworks maven repositories are down #2542

Open
wants to merge 4 commits into
base: release-2.12.x
Choose a base branch
from
+20 −10
Open

TASK-7330 - Hortonworks maven repositories are down #2542

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
4e840fd
cicd: Change default hadoop flavour from hdp3.1 to emr6.1 #TASK-7330
j-coll Jan 22, 2025
baf5a69
cicd: Use vars instead of envs. #TASK-7330
j-coll Jan 22, 2025
f7114b2
cicd: Fix workflow maven build. #TASK-7330
j-coll Jan 23, 2025
39d816f
Update pom dependency opencga-storage-hadoop-deps-emr6.1 #TASK-7330
juanfeSanahuja Mar 3, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions .github/workflows/develop.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ jobs:
build:
uses: opencb/java-common-libs/.github/workflows/build-java-app-workflow.yml@develop
with:
maven_opts: -P storage-hadoop,hdp3.1,RClient,opencga-storage-hadoop-deps -Dopencga.war.name=opencga -Dcheckstyle.skip -pl '!:opencga-storage-hadoop-deps-emr6.1,!:opencga-storage-hadoop-deps-hdp2.6'
maven_opts: -P storage-hadoop,${{ vars.HADOOP_FLAVOUR }},RClient,opencga-storage-hadoop-deps -Dopencga.war.name=opencga -Dcheckstyle.skip -pl ':opencga-app' --also-make

test:
uses: ./.github/workflows/test-analysis.yml
Expand All @@ -24,7 +24,7 @@ jobs:
uses: opencb/java-common-libs/.github/workflows/deploy-maven-repository-workflow.yml@develop
needs: test
with:
maven_opts: -P storage-hadoop,hdp3.1 -Dopencga.war.name=opencga
maven_opts: -P storage-hadoop,${{ vars.HADOOP_FLAVOUR }} -Dopencga.war.name=opencga
secrets: inherit

deploy-docker:
Expand Down
7 changes: 6 additions & 1 deletion .github/workflows/manual-deploy-docker.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,6 +10,11 @@ on:
description: "The tag for the new docker."
type: string
required: true
hadoop_flavour:
description: "The hadoop flavour to use."
type: string
required: false
default: "emr6.1"

jobs:
build:
Expand All @@ -35,7 +40,7 @@ jobs:
./.github/workflows/scripts/get_same_branch.sh ${{ github.ref_name }}
fi
- name: Maven Build (skip tests)
run: mvn -T 2 clean install -DskipTests -P storage-hadoop,hdp3.1,RClient,opencga-storage-hadoop-deps -Dopencga.war.name=opencga -Dcheckstyle.skip -pl '!:opencga-storage-hadoop-deps-emr6.1,!:opencga-storage-hadoop-deps-hdp2.6'
run: mvn -T 2 clean install -DskipTests -P storage-hadoop,${{ inputs.hadoop_flavour }},RClient,opencga-storage-hadoop-deps -Dopencga.war.name=opencga -Dcheckstyle.skip -pl ':opencga-app' --also-make
- uses: actions/upload-artifact@v4
with:
name: build-folder
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/pull-request-merge.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ jobs:
build:
uses: opencb/java-common-libs/.github/workflows/build-java-app-workflow.yml@develop
with:
maven_opts: -P storage-hadoop,hdp3.1,RClient,opencga-storage-hadoop-deps -Dopencga.war.name=opencga -Dcheckstyle.skip -pl '!:opencga-storage-hadoop-deps-emr6.1,!:opencga-storage-hadoop-deps-hdp2.6'
maven_opts: -P storage-hadoop,${{ vars.HADOOP_FLAVOUR }},RClient,opencga-storage-hadoop-deps -Dopencga.war.name=opencga -Dcheckstyle.skip -pl ':opencga-app' --also-make

delete-docker:
uses: opencb/java-common-libs/.github/workflows/delete-docker-hub-workflow.yml@develop
Expand Down
4 changes: 2 additions & 2 deletions .github/workflows/release.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,13 +10,13 @@ jobs:
build:
uses: opencb/java-common-libs/.github/workflows/build-java-app-workflow.yml@develop
with:
maven_opts: -P storage-hadoop,hdp3.1,RClient,opencga-storage-hadoop-deps -Dopencga.war.name=opencga -Dcheckstyle.skip -pl '!:opencga-storage-hadoop-deps-emr6.1,!:opencga-storage-hadoop-deps-hdp2.6'
maven_opts: -P storage-hadoop,${{ vars.HADOOP_FLAVOUR }},RClient,opencga-storage-hadoop-deps -Dopencga.war.name=opencga -Dcheckstyle.skip -pl ':opencga-app' --also-make

deploy-maven:
uses: opencb/java-common-libs/.github/workflows/deploy-maven-repository-workflow.yml@develop
needs: build
with:
maven_opts: -P storage-hadoop,hdp3.1 -Dopencga.war.name=opencga
maven_opts: -P storage-hadoop,${{ vars.HADOOP_FLAVOUR }} -Dopencga.war.name=opencga
secrets: inherit

deploy-docker:
Expand Down
3 changes: 2 additions & 1 deletion .github/workflows/task.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,14 +12,15 @@ jobs:
build:
uses: opencb/java-common-libs/.github/workflows/build-java-app-workflow.yml@develop
with:
maven_opts: -P storage-hadoop,hdp3.1,RClient,opencga-storage-hadoop-deps -Dopencga.war.name=opencga -Dcheckstyle.skip -pl '!:opencga-storage-hadoop-deps-emr6.1,!:opencga-storage-hadoop-deps-hdp2.6'
maven_opts: -P storage-hadoop,${{ vars.TASK_HADOOP_FLAVOUR }},RClient,opencga-storage-hadoop-deps -Dopencga.war.name=opencga -Dcheckstyle.skip -pl ':opencga-app' --also-make

test:
uses: ./.github/workflows/test-analysis.yml
needs: build
secrets: inherit
with:
test_profile: runShortTests
hadoop_flavour: ${{ vars.TASK_HADOOP_FLAVOUR }}

deploy-docker:
uses: opencb/java-common-libs/.github/workflows/deploy-docker-hub-workflow.yml@develop
Expand Down
8 changes: 6 additions & 2 deletions .github/workflows/test-analysis.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,10 @@ on:
test_profile:
type: string
required: true
hadoop_flavour:
type: string
required: false
default: "emr6.1"
mvn_opts:
type: string

Expand Down Expand Up @@ -41,7 +45,7 @@ jobs:
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # Needed to get PR information, if any
SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}
run: mvn -T 2 clean install -P storage-hadoop,hdp3.1,${{ inputs.test_profile }} -DskipTests -Dcheckstyle.skip org.sonarsource.scanner.maven:sonar-maven-plugin:sonar -Dsonar.projectKey=opencb_opencga
run: mvn -T 2 clean install -P storage-hadoop,${{ inputs.hadoop_flavour }},${{ inputs.test_profile }} -DskipTests -Dcheckstyle.skip org.sonarsource.scanner.maven:sonar-maven-plugin:sonar -Dsonar.projectKey=opencb_opencga

test:
name: Execute JUnit and Jacoco tests
Expand Down Expand Up @@ -72,7 +76,7 @@ jobs:
mongodb-version: 6.0
mongodb-replica-set: rs-test
- name: Run Junit tests
run: mvn -B verify surefire-report:report --fail-never -P storage-hadoop,hdp3.1,${{ inputs.test_profile }} -Dcheckstyle.skip -Popencga-storage-hadoop-deps -pl '!:opencga-storage-hadoop-deps-emr6.1,!:opencga-storage-hadoop-deps-hdp2.6' ${{ inputs.mvn_opts }}
run: mvn -B verify surefire-report:report --fail-never -P storage-hadoop,${{ inputs.hadoop_flavour }},${{ inputs.test_profile }} -Dcheckstyle.skip -Popencga-storage-hadoop-deps -pl ':opencga-app' --also-make ${{ inputs.mvn_opts }}
- name: Publish Test Report
uses: scacap/action-surefire-report@v1
env:
Expand Down
2 changes: 1 addition & 1 deletion pom.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -281,7 +281,7 @@
</dependency>
<dependency>
<groupId>org.opencb.opencga</groupId>
<artifactId>opencga-storage-hadoop-deps-hdp3.1</artifactId>
<artifactId>opencga-storage-hadoop-deps-emr6.1</artifactId>
<version>${project.version}</version>
<classifier>shaded</classifier>
</dependency>
Expand Down
Loading