Use pre-computed distances in metrics

[lazappi]

Describe your changes

• Add calculation of distances to/between waypoints and label centroids to dataset pre-processing
• Add a post-processing component that calculates distances in the embedding space
• Modify co-ranking metrics to use pre-computed distances
• Modify distance correlation metrics to use pre-computed distances
• Add to centroid and between label distance correlation scores
• Move spectral distance correlation to a separate component
• Update documentation for distance correlation metrics
• Disable the trustworthiness metric as it is calculated as part of the co-ranking metrics

Fixes #7

Checklist before requesting a review

• I have performed a self-review of my code

• Check the correct box. Does this PR contain:

  • Breaking changes
  • New functionality
  • Major changes
  • Minor changes
  • Bug fixes

• Proposed changes are described in the CHANGELOG.md

• CI Tests succeed and look good!

[lazappi]

@rcannood The CI can't find the new test resources. I have synced them to S3, is there something else I need to do?

[rcannood]

LGTM!

[rcannood]

FYI -- I think I sometimes solve this by:

Suggested change

	shape = input$shape
	)
	output$obs_names <- input$obs_names
	obs = input$obs[,integer(0)],
	var = input$var[,integer(0)]
	)

[rcannood]

@rcannood The CI can't find the new test resources. I have synced them to S3, is there something else I need to do?

This is an issue with the caching -- Removing the cache resolved the issue.

Update: Should be resolved with viash-io/viash-actions@v6.6.1