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openproblems-bio / task_ist_preprocessing Public

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Add vizgen merscope processing to benchmark #82

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Add vizgen merscope processing to benchmark

Add vizgen merscope processing to benchmark #82

Summary
Jobs
- Build target branch
  
  Build (basic_count_aggregation, methods_count_aggregation, executable, docker|native, src/methods...
  
  Build (normalize_by_volume, methods_normalization, executable, docker|native, src/methods_normali...
  
  Build (basic_transcript_assignment, methods_transcript_assignment, executable, docker|native, src...
  
  Build (process_dataset, data_processors, executable, docker|native, src/data_processors/process_d...
  
  Build (alpha_shapes, methods_calculate_cell_volume, executable, docker|native, src/methods_calcul...
  
  Build (gene_efficiency_correction, methods_expression_correction, executable, docker|native, src/...
  
  Build (ssam, methods_cell_type_annotation, executable, docker|native, src/methods_cell_type_annot...
  
  Build (custom_segmentation, methods_segmentation, executable, docker|native, src/methods_segmenta...
  
  Build (vizgen_merscope, datasets/loaders, executable, docker|native, src/datasets/loaders/vizgen_...
  
  Build (allen_brain_cell_atlas, datasets/loaders, executable, docker|native, src/datasets/loaders/...
  
  Build (tenx_xenium, datasets/loaders, executable, docker|native, src/datasets/loaders/tenx_xenium...
  
  Build (crop_region, datasets/processors, executable, docker, src/datasets/processors/crop_region/...
  
  Build (similarity, metrics, executable, docker|native, src/metrics/similarity/config.vsh.yaml, ta...
  
  Build (basic_qc_filter, methods_qc_filter, executable, docker|native, src/methods_qc_filter/basic...
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