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fix viash 0.9 refactoring (#79) #3

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Job	Run time
build / Build target branch	30s
build / Build (mean_rowwise_error, metrics, executable, docker, src/metrics/mean_rowwise_error/config.vsh...	1m 38s
build / Build (mean_rowwise_correlation, metrics, executable, docker, src/metrics/mean_rowwise_correlatio...	1m 43s
build / Build (ground_truth, control_methods, executable, docker, src/control_methods/ground_truth/config...	1m 42s
build / Build (mean_across_celltypes, control_methods, executable, docker, src/control_methods/mean_acros...	3m 37s
build / Build (mean_outcome, control_methods, executable, docker, src/control_methods/mean_outcome/config...	1m 39s
build / Build (sample, control_methods, executable, docker, src/control_methods/sample/config.vsh.yaml, t...	1m 41s
build / Build (mean_across_compounds, control_methods, executable, docker, src/control_methods/mean_acros...	1m 39s
build / Build (zeros, control_methods, executable, docker, src/control_methods/zeros/config.vsh.yaml, tar...	1m 35s
build / Build (jn_ap_op2, methods, executable, docker\|native, src/methods/jn_ap_op2/config.vsh.yaml, targ...	4m 18s
build / Build (lgc_ensemble_train, methods, executable, docker\|native, src/methods/lgc_ensemble_train/con...	11m 55s
build / Build (transformer_ensemble, methods, executable, docker, src/methods/transformer_ensemble/config...	5m 13s
build / Build (pyboost, methods, executable, docker\|native, src/methods/pyboost/config.vsh.yaml, target/e...	4m 11s
build / Build (lgc_ensemble_prepare, methods, executable, docker\|native, src/methods/lgc_ensemble_prepare...	13m 7s
build / Build (nn_retraining_with_pseudolabels, methods, executable, docker\|native, src/methods/nn_retrai...	4m 17s
build / Build (lgc_ensemble_direct, methods, executable, docker\|native, src/methods/lgc_ensemble_direct/c...	11m 7s
build / Build (scape, methods, executable, docker, src/methods/scape/config.vsh.yaml, target/executable/m...	4m 53s
build / Build (lgc_ensemble_predict, methods, executable, docker\|native, src/methods/lgc_ensemble_predict...	10m 43s
build / Build (add_uns_metadata, process_dataset, executable, docker, src/process_dataset/add_uns_metadat...	1m 28s
build / Build (run_limma, process_dataset, executable, docker, src/process_dataset/run_limma/config.vsh.y...	1m 57s
build / Build (filter_obs, process_dataset, executable, docker, src/process_dataset/filter_obs/config.vsh...	2m 6s
build / Build (split_sc, process_dataset, executable, docker, src/process_dataset/split_sc/config.vsh.yam...	2m 58s
build / Build (compute_pseudobulk, process_dataset, executable, docker, src/process_dataset/compute_pseud...	1m 33s
build / Build (filter_vars, process_dataset, executable, docker, src/process_dataset/filter_vars/config.v...	1m 51s
build / Build (convert_h5ad_to_parquet, process_dataset, executable, docker, src/process_dataset/convert_...	2m 1s
build / Build (bootstrap, process_dataset, executable, docker, src/process_dataset/bootstrap/config.vsh.y...	2m 0s
build / Build (generate_id_map, process_dataset, executable, docker, src/process_dataset/generate_id_map/...	1m 59s
build / Build (convert_kaggle_h5ad_to_parquet, process_dataset, executable, docker, src/process_dataset/c...	2m 8s
	1h 45m 29s

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fix viash 0.9 refactoring (#79) #3

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fix viash 0.9 refactoring (#79) #3

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