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add sc data preprocessing#77

Merged
rcannood merged 13 commits intomainfrom
add_single_cell_models
Oct 30, 2024
Merged

add sc data preprocessing#77
rcannood merged 13 commits intomainfrom
add_single_cell_models

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@szalata szalata commented Oct 15, 2024

Describe your changes

We want to be able to add methods that operate on single-cell expression data instead of pseudobulk dge analysis results, so "sc_train_h5ad", "sc_test_h5ad" were added.
I haven't rerun it for testing.

Checklist before requesting a review

  • I have performed a self-review of my code

  • Check the correct box. Does this PR contain:

    • Breaking changes
    • New functionality (new method, new metric, ...)
    • Major changes
    • Minor changes
    • Bug fixes
  • Proposed changes are described in the CHANGELOG.md

  • CI Tests succeed and look good!

@szalata szalata requested a review from rcannood October 15, 2024 19:35
@rcannood rcannood merged commit cb4543d into main Oct 30, 2024
@rcannood rcannood deleted the add_single_cell_models branch October 30, 2024 21:07
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2 participants