Merge branch 'main' into ds_3039_sumstats_update

opentargets · Nov 21, 2023 · 0acb106 · 0acb106
2 parents 55ac5ad + 4997432
commit 0acb106
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diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -27,13 +27,13 @@ repos:
       - id: python-check-blanket-noqa
 
   - repo: https://github.com/hadialqattan/pycln
-    rev: v2.3.0
+    rev: v2.4.0
     hooks:
       - id: pycln
         args: [--all]
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.1.5
+    rev: v0.1.6
     hooks:
       - id: ruff
 
@@ -50,7 +50,7 @@ repos:
       - id: black
 
   - repo: https://github.com/alessandrojcm/commitlint-pre-commit-hook
-    rev: v9.8.0
+    rev: v9.9.0
     hooks:
       - id: commitlint
         additional_dependencies: ["@commitlint/config-conventional"]

diff --git a/poetry.lock b/poetry.lock
diff --git a/pyproject.toml b/pyproject.toml
@@ -36,7 +36,7 @@ ruff = "^0.1.3"
 
 [tool.poetry.group.docs.dependencies]
 mkdocs = "^1.5.3"
-mkdocstrings-python = "^1.7.3"
+mkdocstrings-python = "^1.7.4"
 mkdocs-material = "*"
 mkdocs-section-index = "^0.3.4"
 mkdocs-git-revision-date-localized-plugin = "^1.2.1"

diff --git a/src/otg/dataset/dataset.py b/src/otg/dataset/dataset.py
@@ -84,9 +84,14 @@ def from_parquet(
 
         Returns:
             Self: Dataset with the parquet file contents
+
+        Raises:
+            ValueError: Parquet file is empty
         """
         schema = cls.get_schema()
         df = session.read_parquet(path=path, schema=schema, **kwargs)
+        if df.isEmpty():
+            raise ValueError(f"Parquet file is empty: {path}")
         return cls(_df=df, _schema=schema)
 
     def validate_schema(self: Dataset) -> None: