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94 changes: 74 additions & 20 deletions CHANGELOG.md
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## v2.0.1 (2024-12-17)
### 🐛 Fix


- release process runs twice [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com)


- release process no longer triggers on skipped release [\@project-defiant](mailto:szymonszyszkowski@gmail.com)

### ♻️ Refactor


- drop version_engine (#940) [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com)

### 🏗 Build


- \[**deps-dev**\] bump ipython from 8.29.0 to 8.30.0 [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com)


- \[**deps-dev**\] bump google-cloud-dataproc from 5.8.0 to 5.10.1 (#951) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com)


- \[**deps-dev**\] bump lxml from 5.1.1 to 5.3.0 (#950) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com)


- \[**deps-dev**\] bump pytest-xdist from 3.5.0 to 3.6.1 (#952) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com)


- \[**deps-dev**\] bump ipykernel from 6.28.0 to 6.29.5 (#953) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com)


- define dependency version constraints + other fixes (#945) [\@Irene López Santiago](mailto:45119610+ireneisdoomed@users.noreply.github.com)

### 🚀 Chore


- siplify the release CI conditions [\@project-defiant](mailto:szymonszyszkowski@gmail.com)

## v2.0.0 (2024-12-10)
### 💥 Breaking


- \[**l2g!**\] implement new training strategy splitting between EFO/gene pairs and with cross validation (#938) [\@Irene López Santiago](mailto:45119610+ireneisdoomed@users.noreply.github.com)

### 🐛 Fix

- \[**L2GFeatureMatrix!**\] streamline feature matrix management (#745) [\@Irene López Santiago](mailto:45119610+ireneisdoomed@users.noreply.github.com)

- \[**l2g_predictions**\] annotate based on list of features + filter out missing annotation (#925) [\@Irene López Santiago](mailto:45119610+ireneisdoomed@users.noreply.github.com)


- swap the ref parse (#935) [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com)

### 🏗 Build


- \[**deps-dev**\] bump ruff from 0.7.1 to 0.8.1 (#936) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com)

- drop airflow orchestration layer from gentropy (#758) [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com)

- \[**deps-dev**\] bump ipython from 8.29.0 to 8.30.0 (#937) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com)

## v2.0.0-rc.3 (2024-11-27)
### ✨ Feature


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- \[**gold_standard**\] add traitFromSourceMappedId to schema (#924) [\@Irene López Santiago](mailto:45119610+ireneisdoomed@users.noreply.github.com)

### 🚀 Chore


- \[**vep**\] Ensembl version update (#931) [\@Daniel Suveges](mailto:daniel.suveges@protonmail.com)

## v2.0.0-rc.2 (2024-11-26)
### 🚀 Chore


- \[**gnomad**\] updating GnomAD version to 4.1 from 4.0 + using joint frequencies (#929) [\@Daniel Suveges](mailto:daniel.suveges@protonmail.com)

## v2.0.0-rc.1 (2024-11-22)
### 💥 Breaking


- \[**L2GFeatureMatrix!**\] streamline feature matrix management (#745) [\@Irene López Santiago](mailto:45119610+ireneisdoomed@users.noreply.github.com)


- drop airflow orchestration layer from gentropy (#758) [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com)

### ✨ Feature


- changing studylocus validation to 95 percent credible sets (#921) [\@Daniel-Considine](mailto:113430683+Daniel-Considine@users.noreply.github.com)

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### 🐛 Fix


- \[**l2g_predictions**\] annotate based on list of features + filter out missing annotation (#925) [\@Irene López Santiago](mailto:45119610+ireneisdoomed@users.noreply.github.com)


- swap the ref parse (#935) [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com)


- r2 for lead variant is always 1 (#919) [\@Yakov](mailto:yt4@sanger.ac.uk)


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### 🏗 Build


- \[**deps-dev**\] bump ruff from 0.7.1 to 0.8.1 (#936) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com)


- \[**deps-dev**\] bump ipython from 8.29.0 to 8.30.0 (#937) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com)


- \[**deps-dev**\] bump pytest-cov from 5.0.0 to 6.0.0 (#893) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com)


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### 🚀 Chore


- \[**vep**\] Ensembl version update (#931) [\@Daniel Suveges](mailto:daniel.suveges@protonmail.com)


- \[**gnomad**\] updating GnomAD version to 4.1 from 4.0 + using joint frequencies (#929) [\@Daniel Suveges](mailto:daniel.suveges@protonmail.com)


- pre-commit autoupdate (#918) [\@pre-commit-ci[bot]](mailto:66853113+pre-commit-ci[bot]@users.noreply.github.com)


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2 changes: 1 addition & 1 deletion pyproject.toml
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[tool.poetry]
name = "gentropy"
# !! version is managed by semantic_release
version = "2.0.0"
version = "2.0.1"
description = "Open Targets python framework for post-GWAS analysis"
authors = ["Open Targets core team"]
license = "Apache-2.0"
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