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chore: make the lb clumping ingest the partitionned data (#806)
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Co-authored-by: Szymon Szyszkowski <ss60@mib117351s.internal.sanger.ac.uk>
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project-defiant and Szymon Szyszkowski authored Oct 2, 2024
1 parent 1c396d2 commit 9177dd4
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions src/gentropy/locus_breaker_clumping.py
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
"""Step to apply linkageg based clumping on study-locus dataset."""
"""Step to apply linkage based clumping on study-locus dataset."""

from __future__ import annotations

Expand Down Expand Up @@ -47,7 +47,8 @@ def __init__(
remove_mhc (bool, optional): If true will use exclude_region() to remove the MHC region.
"""
sum_stats = SummaryStatistics.from_parquet(
session, summary_statistics_input_path, recursiveFileLookup=True
session,
summary_statistics_input_path,
)
lbc = sum_stats.locus_breaker_clumping(
lbc_baseline_pvalue,
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