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fix: finngen r12 curation url updated from R11 to R12 (#92)
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* feat: update to finngen release 12

* fix: poetry export plugin

* fix: poetry.lock

* fix: updating pycln

* fix: bumping versions

* fix: adding pycln to precommit

* fix: removing pycln from toml

* fix: updating path to finngen r12 curation url

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Co-authored-by: Szymon Szyszkowski <69353402+project-defiant@users.noreply.github.com>
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Daniel-Considine and project-defiant authored Feb 5, 2025
1 parent a5cd982 commit 1e70c06
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/ot_orchestration/dags/config/finngen_ingestion.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ nodes:
step.finngen_summary_stats_url_prefix: gs://finngen-public-data-r12/summary_stats/finngen_R12_
step.sample_size: 500_348
step.finngen_summary_stats_url_suffix: '.gz'
step.efo_curation_mapping_url: https://raw.githubusercontent.com/opentargets/curation/24.09.1/mappings/disease/manual_string.tsv
step.efo_curation_mapping_url: https://raw.githubusercontent.com/opentargets/curation/refs/tags/25.01/mappings/disease/manual_string.tsv
step.session.write_mode: overwrite
step.session.start_hail: true
- id: finngen_finemapping_ingestion
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