feat: sum pips to 0.95 in susie finemapper (#100)

Co-authored-by: Szymon Szyszkowski <ss60@mib117351s.internal.sanger.ac.uk>
opentargets · Jan 28, 2025 · 2648ddd · 2648ddd
1 parent 2870e74
commit 2648ddd
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/ot_orchestration/operators/batch/finemapping.py b/src/ot_orchestration/operators/batch/finemapping.py
@@ -214,7 +214,7 @@ def susie_finemapping_command(self) -> list[str]:
                 "step.lead_pval_threshold=1e-5 "
                 "step.purity_mean_r2_threshold=0.25 "
                 "step.purity_min_r2_threshold=0.25 "
-                "step.cs_lbf_thr=2 step.sum_pips=0.99 "
+                "step.cs_lbf_thr=2 step.sum_pips=0.95 "
                 "step.susie_est_tausq=False "
                 "step.run_carma=False "
                 "step.run_sumstat_imputation=False "