Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add support for downloading plant species with pyEnsembl #305

Merged
merged 1 commit into from
Mar 28, 2024

Commits on Mar 28, 2024

  1. Add support for downloading plant species with pyEnsembl

    This commit introduces the ability to download plant species data using pyEnsembl. We've added the 'is_plant' parameter to the Species class, and registered two new species: Arabidopsis Thaliana and Oryza Sativa (Rice).
    
    We've also added the ENSEMBL_PLANTS_FTP_SERVER URL, and the PLANTS_GTF_SUBDIR_TEMPLATE and PLANTS_FASTA_SUBDIR_TEMPLATE for creating the download links. The code checks if the species is a plant to determine which templates to use.
    pamonlan committed Mar 28, 2024
    Configuration menu
    Copy the full SHA
    8c32bc1 View commit details
    Browse the repository at this point in the history