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    13 repositories

    • scMaestro

      Public
      scMaestro: end-to-end single-cell data analysis workflow with Snakemake and Singularity.
      Python
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • SF_LR_scRNA

      Public
      R
      •1•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • SF_sc-smk-wl

      Public
      HTML
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • SF_biocontainer

      Public
      Dockerfile
      •1•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • SF_Downstream_RNA-seq

      Public
      RNA-Seq Downstream Differential Gene Expression and Gene Set Enrichment Analysis
      R
      •
      MIT License
      •1•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • SF_LR_VAP

      Public
      SF Long Read Variant Analysis pipeline
      Python
      •
      MIT License
      •1•1•0•0•Updated May 13, 2024May 13, 2024

    • SF_LR_Transcriptome

      Public
      Long read transcriptome pipeline for Pacbio and ONT
      Python
      •
      MIT License
      •1•0•0•0•Updated May 13, 2024May 13, 2024

    • SF_Fastq-QC

      Public
      Fastq QC pipeline for fast project delivery, also called "nopipe".
      Python
      •
      MIT License
      •1•0•0•0•Updated May 1, 2024May 1, 2024

    • SF_Polylox-BC

      Public
      Repository for Polylox barcoding extraction scripts
      Python
      •
      MIT License
      •1•1•0•0•Updated Apr 26, 2024Apr 26, 2024

    • SF_LR_SOMATIC

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Apr 26, 2024Apr 26, 2024

    • SF_MAS-SC

      Public
      Python
      •1•0•0•0•Updated Apr 26, 2024Apr 26, 2024

    • SF_miRNA

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Apr 26, 2024Apr 26, 2024

    • SF_ATAC-seq

      Public
      Python
      •1•0•0•0•Updated Apr 26, 2024Apr 26, 2024