Repositories list

• vision

  Public
  Variation Identification System to Improve Outcomes in Nanopore (V.I.S.I.O.N)

  MIT License

  •0•0•0•0•Updated Nov 14, 2018Nov 14, 2018

• FRIDAY

  Public
  Translation based variant caller

  Python

  •

  MIT License

  •0•5•0•0•Updated Oct 12, 2018Oct 12, 2018

• preprocessing

  Public
  Data pre-processing pipeline for VISION genome variant caller. Pre-processes fastq files into analysis ready bams based on gatk best practices workflow

  0•0•0•0•Updated Sep 21, 2018Sep 21, 2018

• friday_cpp

  Public
  FRIDAY implemented in C++

  C++

  •

  MIT License

  •0•0•0•0•Updated Jul 7, 2018Jul 7, 2018

• alleleSelector

  Public archive
  nanoporegenome-alignment

  Python

  •0•1•0•0•Updated Apr 5, 2018Apr 5, 2018

• deePore

  Public archive
  Deep learning based nanopore variant caller

  Python

  •

  MIT License

  •1•0•0•2•Updated Mar 2, 2018Mar 2, 2018

• genomePileup

  Public archive
  Python

  •

  MIT License

  •0•0•0•0•Updated Mar 2, 2018Mar 2, 2018

• KalleR

  Public archive
  Deep neural network based variant caller

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 27, 2018Feb 27, 2018