Repositories list

• FooDMe

  Public
  A reproducible and scalable snakemake workflow for the analysis of DNA metabarcoding experiments, with a special focus on food and feed samples.

  bioinformaticssnakemakepipeline+ 8ngspublic-healthmetabarcodingngs-pipelinetargeted-sequencingfood-monitoringfood-authenticity+ 1

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•4•1•0•Updated Sep 20, 2024Sep 20, 2024

• BaRCoD

  Public
  Barcode Recovery and Comparison from Database

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Sep 12, 2024Sep 12, 2024

• taxidtools

  Public
  Python library to deal with taxonomic IDs and lineages from the NCBI's Taxdump files

  pythontaxonomypython-library+ 7ancestryncbi-taxonomyncbilineagetaxdumptaxidslineages

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•1•0•Updated Jun 25, 2024Jun 25, 2024

• MOOSE

  Public
  Modified Organism Screening by Enrichment

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Dec 14, 2023Dec 14, 2023

• AutoBak

  Public
  Automated bacteria characterization Workflow

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Dec 5, 2022Dec 5, 2022

• staged-recipes

  Public
  A place to submit conda recipes before they become fully fledged conda-forge feedstocks

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5.1k•0•0•0•Updated Nov 16, 2021Nov 16, 2021

• RRW-PrimerBLAST

  Public archive
  Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.

  blastmetabarcodingprimer-blast

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3•7•0•0•Updated Jun 11, 2021Jun 11, 2021

• BAnalyzer

  Public archive
  Barcode Analyzer for metabarcoding experiments

  metabarcodingsequence-databasetargeted-sequencing

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jun 7, 2021Jun 7, 2021

• tidySpectR

  Public
  An R package for tidy chemometric analysis.

  tidyversenmrtidy+ 4spectroscopychromatographytidymodelsr

  R

  •

  Other

  •1•0•0•0•Updated Apr 9, 2021Apr 9, 2021

• MetaSeqSim

  Public
  Simulator of metabarcoding sequencing runs - Glorified ART wrapper

  sequencingilluminametabarcoding+ 2simulated-datapaired-end

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•1•0•Updated Nov 5, 2020Nov 5, 2020