Repositories list

• gms-artic

  Public
  A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

  Nextflow

  •

  GNU Affero General Public License v3.0

  •88•0•0•0•Updated Aug 31, 2022Aug 31, 2022

• auspice

  Public
  Web app for visualizing pathogen evolution

  JavaScript

  •

  GNU Affero General Public License v3.0

  •165•0•0•0•Updated Aug 23, 2021Aug 23, 2021

• Twist_DNA

  Public
  Python

  •

  GNU General Public License v3.0

  •5•0•0•0•Updated Aug 23, 2021Aug 23, 2021

• gms-JASEN

  Public
  Nextflow

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jun 3, 2021Jun 3, 2021

• var-gene-db

  Public
  0•0•0•0•Updated Jun 1, 2021Jun 1, 2021

• nextflow_wgs

  Public
  Perl

  •5•0•0•0•Updated May 26, 2021May 26, 2021

• Twist_RNA

  Public
  Python

  •3•0•0•0•Updated May 25, 2021May 25, 2021

• artic-pangolin-nf

  Public
  pangolin integrated in artic for Illumina and Nanopore data

  Nextflow

  •

  GNU Affero General Public License v3.0

  •0•1•0•0•Updated Mar 29, 2021Mar 29, 2021

• pangolin-nf

  Public
  Nextflow

  •0•0•0•0•Updated Feb 24, 2021Feb 24, 2021

• nextflow_rnaseqfus

  Public
  Fusion genes identification pipeline

  Perl

  •4•0•0•0•Updated Feb 2, 2021Feb 2, 2021

• CARtool

  Public
  Coverage Analysis Report tool

  Python

  •

  MIT License

  •4•0•0•0•Updated Sep 3, 2020Sep 3, 2020