Repositories list

• USUV_submission

  Public
  Usutu virus submission made easy—this structured template is designed for programmatically submitting raw read samples, runs, and experiment metadata to ENA. Converts tables to XML, supports adding or modifying metadata, retrieves submission receipts, and includes metadata accessions.

  Python

  •

  MIT License

  •1•0•0•0•Updated Feb 12, 2025Feb 12, 2025

• SARS-CoV-2_submission

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated Feb 12, 2025Feb 12, 2025

• updated_illumina_workflow

  Public
  A Snakemake workflow for processing Illumina sequencing data, tested and validated on wastewater metagenomics.

  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated Feb 6, 2025Feb 6, 2025

• Rashidi_et_al-2024-COVID19-brain-apoptosis

  Public
  Scripts and Data for Rashidi et al 2024 Manuscript

  ImageJ Macro

  •1•0•0•0•Updated Mar 5, 2024Mar 5, 2024

• ENA-submission

  Public
  Script, parser, command used to submit data to ENA

  Perl

  •0•0•0•0•Updated Oct 24, 2022Oct 24, 2022

• tsv2xmlParser

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated May 5, 2021May 5, 2021