Repositories list

• faang-pydantics-validation

  Public
  Handles validation for FAANG submission

  Python

  •0•0•0•0•Updated Jul 31, 2025Jul 31, 2025

• dcc-portal-frontend

  Public
  This code supports the frontend operations of the FAANG data portal

  TypeScript

  •

  Apache License 2.0

  •2•3•0•3•Updated Mar 25, 2025Mar 25, 2025

• dcc-validate-metadata

  Public
  Validate the metadata complies with a set of rules

  Python

  •0•4•0•8•Updated Mar 20, 2025Mar 20, 2025

• dcc-metadata

  Public
  This repo contains the faang metadata schema and associated tools

  faangmetadata-standards

  Python

  •

  Apache License 2.0

  •5•8•0•2•Updated Mar 5, 2025Mar 5, 2025

• analysis-TAGADA

  Public
  GENE-SWitCH project RNA-Seq analysis pipeline

  Nextflow

  •

  Apache License 2.0

  •6•28•1•1•Updated Feb 19, 2025Feb 19, 2025

• comm-data-portal-projects

  Public
  Repository to capture FAANG project information and images for project specific pages on FAANG data portal.

  Apache License 2.0

  •2•0•0•0•Updated Dec 10, 2024Dec 10, 2024

• angular_skeleton

  Public
  TypeScript

  •1•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• dcc-documentation

  Public
  0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

• dcc-portal-frontend-ssr

  Public
  Latest FAANG version in Angular 18 and with SSR

  TypeScript

  •0•0•0•0•Updated Aug 27, 2024Aug 27, 2024

• dcc-eurofaang-ri-fe

  Public
  TypeScript

  •

  Apache License 2.0

  •0•0•0•0•Updated Jul 8, 2024Jul 8, 2024

• dcc-eurofaang-ri-be

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jul 3, 2024Jul 3, 2024

• fastocc

  Public
  Python

  •

  Apache License 2.0

  •1•6•0•0•Updated Jan 25, 2024Jan 25, 2024

• dcc-dev-environment

  Public
  Dockerfile

  •

  Apache License 2.0

  •0•0•0•1•Updated Nov 28, 2023Nov 28, 2023

• dcc-portal-backend

  Public
  This code supports the backend operations of the FAANG data portal

  Python

  •

  Apache License 2.0

  •1•1•0•7•Updated Oct 18, 2023Oct 18, 2023

• dcc-ena-submissions-frontend

  Public
  TypeScript

  •0•0•0•0•Updated Aug 16, 2023Aug 16, 2023

• dcc-kubernetes-configs

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•3•Updated Jun 20, 2023Jun 20, 2023

• ATAC-training-Apr-2023

  Public
  R

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 20, 2023Apr 20, 2023

• dcc-bulk-data-downloader

  Public
  Python

  •0•0•0•0•Updated Mar 29, 2023Mar 29, 2023

• BayesRCO

  Public
  A software package that includes BayesCpi, BayesR, BayesRC, and two extensions of BayesRC to overlapping data: BayesRC+ and BayesRCpi

  Fortran

  •1•12•1•0•Updated Feb 28, 2023Feb 28, 2023

• ATAC-training-Feb-2023

  Public
  R

  •

  Apache License 2.0

  •0•1•0•0•Updated Feb 1, 2023Feb 1, 2023

• GSOC-dcc-validate-metadata

  Public
  Minimalist version of dcc_validate_metadata

  Python

  •0•0•0•1•Updated Sep 15, 2022Sep 15, 2022

• dcc-query-api

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Aug 5, 2022Aug 5, 2022

• analysis-hic

  Public
  Analysis of Chromosome Conformation Capture data (Hi-C)

  Python

  •

  MIT License

  •60•0•0•0•Updated Jul 28, 2022Jul 28, 2022

• eurofaang-certificate-renewal-cronjob

  Public
  Cronjob to renew Eurofaang certificate and copy the TLS secret to the correct namespace

  Python

  •0•0•0•0•Updated Jul 18, 2022Jul 18, 2022

• analysis-atacseq

  Public
  ATAC-seq peak-calling, QC and differential analysis pipeline

  Nextflow

  •

  MIT License

  •125•0•0•0•Updated Jul 12, 2022Jul 12, 2022

• ensembl-annotation-cronjob

  Public
  Python script (web scraping) running as a cron job to load the ensembl-annotation index

  Python

  •0•0•0•0•Updated Jul 12, 2022Jul 12, 2022

• analysis-isoseq

  Public
  GENE-SWitCH project Iso-Seq analysis pipeline

  Groovy

  •

  MIT License

  •3•0•0•0•Updated Jul 6, 2022Jul 6, 2022

• eurofaang-frontend

  Public
  HTML

  •0•0•0•0•Updated May 6, 2022May 6, 2022

• GSM-pipeline

  Public
  Nextflow

  •

  MIT License

  •0•0•0•0•Updated Feb 16, 2022Feb 16, 2022

• bedToBigBed

  Public
  Python script to convert CAGE BED files to BigBed format

  Python

  •0•0•0•0•Updated Nov 18, 2021Nov 18, 2021