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    7 repositories

    • DDX3X_3Y_comparison

      Public
      A collection of data, scripts and plots for our manuscript comparing DDX3X and DDX3Y paralogs in HCT116 cells
      R
      •3•0•0•0•Updated Jul 23, 2021Jul 23, 2021

    • DDX3X_RPCLIP

      Public
      R
      •2•0•0•0•Updated Apr 29, 2021Apr 29, 2021

    • filter-fastq

      Public
      Filter reads from a FASTQ file using a list of identifiers.
      Python
      •
      MIT License
      •5•6•0•0•Updated Feb 3, 2021Feb 3, 2021

    • extract-transcript-regions

      Public
      For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and CDS).
      Python
      •
      GNU General Public License v2.0
      •14•0•0•0•Updated May 9, 2018May 9, 2018

    • tripseq-analysis

      Public
      Analysis tools for TrIP-seq data.
      Python
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated Jun 24, 2017Jun 24, 2017

    • metagene-maker

      Public
      makes metagene plots for next-gen sequencing data over given regions
      Python
      •
      GNU General Public License v2.0
      •4•0•0•0•Updated May 18, 2017May 18, 2017

    • transcriptome-properties

      Public
      For bioinformatic analysis of RNA transcripts. Calculate various properties of an input transcriptome such as length, GC content, and number of exons per transcript or transcript region.
      Python
      •4•0•0•0•Updated Oct 21, 2015Oct 21, 2015