Repositories list

• microcircuit-PD14-model

  Public
  Cortical microcircuit model (Potjans & Diesmann, 2014)

  Python

  •4•1•15•0•Updated Jul 30, 2025Jul 30, 2025

• SPADE_surrogates

  Public
  Repository containing code necessary to reproduce the results of Stella, A., Bouss, P., Palm, G., & Grün, S. (2021). Generating surrogates for significance estimation of spatio-temporal spike patterns

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•1•0•0•Updated Jul 18, 2025Jul 18, 2025

• Builder

  Public
  Compile scripts for local installs of software packages

  Shell

  •

  GNU General Public License v3.0

  •5•3•11•4•Updated Jul 9, 2025Jul 9, 2025

• elephant

  Public
  Elephant is the ElectroPhysiology Analysis Toolkit

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •94•9•23•0•Updated Jun 18, 2025Jun 18, 2025

• mesocircuit-model

  Public
  Mesocircuit Model

  Python

  •

  Other

  •2•4•27•3•Updated Jun 12, 2025Jun 12, 2025

• alpaca

  Public
  Automated Lightweight Provenance Capture

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•1•0•1•Updated Jun 2, 2025Jun 2, 2025

• neuroephys_analysis_ontology

  Public
  Neuroelectrophysiology Analysis Ontology (NEAO)

  Creative Commons Attribution 4.0 International

  •0•1•3•0•Updated May 23, 2025May 23, 2025

• gather-metadata

  Public
  Collector for generic metadata of HPC execution environment focussed on benchmarking

  Python

  •

  GNU General Public License v3.0

  •0•0•1•0•Updated May 23, 2025May 23, 2025

• NLP-preprocessing

  Public
  Jupyter Notebook

  •2•0•0•0•Updated May 15, 2025May 15, 2025

• beNNch-models

  Public
  PyNEST models for performance benchmarking with beNNch

  Python

  •

  GNU General Public License v2.0

  •8•2•0•0•Updated Mar 27, 2025Mar 27, 2025

• multi-area-model

  Public
  A large-scale spiking model of the vision-related areas of macaque cortex.

  neural-networksimulationcomputational-neuroscience+ 8connectivitycerebral-cortexfunctional-connectivityprimatesfull-scalemulti-areapredictive-connectomics+ 1

  Python

  •

  Other

  •50•75•6•0•Updated Mar 21, 2025Mar 21, 2025

• human-multi-area-model

  Public
  Python

  •

  GNU General Public License v3.0

  •3•4•0•2•Updated Mar 19, 2025Mar 19, 2025

• python-neo

  Public
  Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •260•3•30•0•Updated Mar 12, 2025Mar 12, 2025

• metadata-archivist

  Public
  Lightweight framework for processing heterogeneous metadata files into a unified structured output

  Python

  •

  GNU General Public License v3.0

  •0•1•4•0•Updated Jan 27, 2025Jan 27, 2025

• neao_use_case

  Public
  Repository containing the code necessary to reproduce the results of the Neuroelectrophysiology Analysis Ontology manuscript

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Dec 6, 2024Dec 6, 2024

• beaverdam

  Public
  Build, Explore, and Visualize Experimental Data and Metadata

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•4•6•0•Updated Nov 28, 2024Nov 28, 2024

• eligibility_propagation

  Public
  Python

  •

  Other

  •36•2•0•0•Updated Nov 28, 2024Nov 28, 2024

• viziphant

  Public
  Visualization of electrophysiological data from Elephant

  electrophysiologyneurophysiologyvisualization+ 1python

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •7•24•3•3•Updated Oct 21, 2024Oct 21, 2024

• beNNch-plot

  Public
  Plotting styles for beNNch

  Python

  •

  GNU General Public License v3.0

  •5•1•3•1•Updated Sep 28, 2024Sep 28, 2024

• networkunit

  Public
  A SciUnit library for validation testing of spiking neural network models.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •6•16•9•2•Updated Aug 1, 2024Aug 1, 2024

• SAS

  Public
  Assessing the similarity of real matrices with arbitrary shape.

  Python

  •

  GNU General Public License v3.0

  •0•5•0•0•Updated May 3, 2024May 3, 2024

• ThaCoMac

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

• alpaca_use_case

  Public
  Repository containing the code necessary to reproduce the results of the Alpaca toolbox manuscript.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 28, 2024Feb 28, 2024

• hybridLFPy

  Public
  Biophysics-based prediction of LFPs from point-neuron networks

  Python

  •

  GNU General Public License v3.0

  •10•10•6•2•Updated Feb 8, 2024Feb 8, 2024

• sciunit

  Public
  A Python framework for test-driven validation of scientific models.

  Python

  •

  MIT License

  •34•0•0•0•Updated Dec 26, 2023Dec 26, 2023

• python-odmltables

  Public
  An interface to convert odML structues to and from table-like representations, such as spreadsheets

  format-converterspreadsheetshacktoberfest+ 2metadata-managementodml

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •10•5•22•4•Updated Dec 5, 2023Dec 5, 2023

• MAM2EBRAINS

  Public archive
  A large-scale spiking model of the vision-related areas of macaque cortex.

  Python

  •

  Other

  •50•0•0•0•Updated Oct 20, 2023Oct 20, 2023

• beNNch

  Public
  Modular performance benchmarking framework for neural network simulations

  Python

  •

  GNU General Public License v3.0

  •7•7•3•0•Updated Oct 18, 2023Oct 18, 2023

• Python-Module-of-the-Week

  Public
  Jupyter Notebook

  •

  MIT License

  •8•14•0•0•Updated Oct 13, 2023Oct 13, 2023

• nnmt

  Public
  Neuronal Network Meanfield Toolbox - official documentation: https://nnmt.readthedocs.io

  Python

  •

  GNU General Public License v3.0

  •5•13•13•1•Updated Sep 6, 2023Sep 6, 2023