Repositories list

• elephant

  Public
  Elephant is the ElectroPhysiology Analysis Toolkit

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •92•9•25•0•Updated Nov 14, 2024Nov 14, 2024

• beaverdam

  Public
  Beaverdam - Build, Explore, and Visualize Experimental Data and Metadata

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•4•3•0•Updated Nov 14, 2024Nov 14, 2024

• mesocircuit-model

  Public
  Mesocircuit Model

  Python

  •

  Other

  •2•2•27•3•Updated Nov 11, 2024Nov 11, 2024

• alpaca

  Public
  Automated Lightweight Provenance Capture

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• beNNch-models

  Public
  PyNEST models for performance benchmarking with beNNch

  Python

  •

  GNU General Public License v2.0

  •7•2•0•1•Updated Oct 24, 2024Oct 24, 2024

• viziphant

  Public
  Visualization of electrophysiological data from Elephant

  electrophysiologyneurophysiologyvisualization+ 1python

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •7•22•3•3•Updated Oct 21, 2024Oct 21, 2024

• beNNch-plot

  Public
  Plotting styles for beNNch

  Python

  •

  GNU General Public License v3.0

  •4•1•3•1•Updated Sep 28, 2024Sep 28, 2024

• metadata-archivist

  Public
  Lightweight framework for processing heterogeneous metadata files into a unified structured output

  Python

  •

  GNU General Public License v3.0

  •0•0•4•1•Updated Sep 6, 2024Sep 6, 2024

• networkunit

  Public
  A SciUnit library for validation testing of spiking neural network models.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •6•15•9•2•Updated Aug 1, 2024Aug 1, 2024

• python-neo

  Public
  Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •248•3•30•0•Updated Jul 30, 2024Jul 30, 2024

• SAS

  Public
  Assessing the similarity of real matrices with arbitrary shape.

  Python

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated May 3, 2024May 3, 2024

• multi-area-model

  Public
  A large-scale spiking model of the vision-related areas of macaque cortex.

  neural-networksimulationcomputational-neuroscience+ 8connectivitycerebral-cortexfunctional-connectivityprimatesfull-scalemulti-areapredictive-connectomics+ 1

  Python

  •

  Other

  •49•70•6•0•Updated Apr 17, 2024Apr 17, 2024

• eligibility_propagation

  Public
  Python

  •

  Other

  •35•2•0•0•Updated Apr 4, 2024Apr 4, 2024

• ThaCoMac

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

• alpaca_use_case

  Public
  Repository containing the code necessary to reproduce the results of the Alpaca toolbox manuscript.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 28, 2024Feb 28, 2024

• hybridLFPy

  Public
  Biophysics-based prediction of LFPs from point-neuron networks

  Python

  •

  GNU General Public License v3.0

  •10•10•6•2•Updated Feb 8, 2024Feb 8, 2024

• sciunit

  Public
  A Python framework for test-driven validation of scientific models.

  Python

  •

  MIT License

  •33•0•0•0•Updated Dec 26, 2023Dec 26, 2023

• python-odmltables

  Public
  An interface to convert odML structues to and from table-like representations, such as spreadsheets

  format-converterspreadsheetshacktoberfest+ 2metadata-managementodml

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •10•5•22•4•Updated Dec 5, 2023Dec 5, 2023

• MAM2EBRAINS

  Public archive
  A large-scale spiking model of the vision-related areas of macaque cortex.

  Python

  •

  Other

  •49•0•0•0•Updated Oct 20, 2023Oct 20, 2023

• beNNch

  Public
  Modular performance benchmarking framework for neural network simulations

  Python

  •

  GNU General Public License v3.0

  •6•7•3•0•Updated Oct 18, 2023Oct 18, 2023

• Python-Module-of-the-Week

  Public
  Jupyter Notebook

  •

  MIT License

  •7•15•0•0•Updated Oct 13, 2023Oct 13, 2023

• Builder

  Public
  Compile scripts for local installs of software packages

  Shell

  •

  GNU General Public License v3.0

  •5•3•11•5•Updated Oct 6, 2023Oct 6, 2023

• nnmt

  Public
  Neuronal Network Meanfield Toolbox - official documentation: https://nnmt.readthedocs.io

  Python

  •

  GNU General Public License v3.0

  •4•12•13•1•Updated Sep 6, 2023Sep 6, 2023

• SPADE_surrogates

  Public
  Repository containing code necessary to reproduce the results of Stella, A., Bouss, P., Palm, G., & Grün, S. (2021). Generating surrogates for significance estimation of spatio-temporal spike patterns

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•1•0•0•Updated Jul 10, 2023Jul 10, 2023

• swan

  Public
  Swan (Sequential Waveform Analyzer) is an open-source graphical tool for tracking single units across multiple sessions of electrophysiological data that was recorded using chronically implanted microelectrode arrays.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•5•11•5•Updated Jul 6, 2023Jul 6, 2023

• reproducing-polychronization

  Public
  Python

  •

  MIT License

  •5•4•2•0•Updated Nov 2, 2022Nov 2, 2022

• lif_meanfield_tools

  Public
  LIF Meanfield Tools

  Python

  •

  GNU General Public License v3.0

  •7•4•1•0•Updated Nov 26, 2021Nov 26, 2021

• L2L

  Public
  Learning to Learn: Gradient-free Optimization framework

  Python

  •

  GNU General Public License v3.0

  •23•0•0•0•Updated Nov 2, 2020Nov 2, 2020

• closed-loop-learning-in-autonomous-agents

  Public
  Simulation and analysis scripts for "A closed-loop toolchain for neural network simulations of learning autonomous agents".

  Python

  •

  MIT License

  •1•6•1•1•Updated Oct 15, 2020Oct 15, 2020

• viziphant-new

  Public archive
  Visualization of Elephant

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•0•0•Updated Oct 2, 2020Oct 2, 2020