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@IPK-BIT IPK Gatersleben - Bioinformatics and Information Technology

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    14 repositories

    • odrl-builder

      Public
      Svelte
      •
      MIT License
      •1•9•1•0•Updated Dec 20, 2024Dec 20, 2024

    • isa-wizard

      Public
      User-friendly application for creating FAIR- and ISA-compliant metadata for results of life science experiments
      Svelte
      •
      MIT License
      •0•3•16•0•Updated Dec 12, 2024Dec 12, 2024

    • mira

      Public
      Enabling Access to MIAPPE-compliant ISA Tab archives through BrAPI
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • divassociate

      Public
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • scorpion-client

      Public
      This project is a high-level interface designed to interact with the API of Scorpion.
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 12, 2024Sep 12, 2024

    • brapi2arc

      Public
      This API allows researchers to submit phenotyping observations to a dataset stored as an Annotated Research Context (ARC). The ARC provides a standardized structure for capturing and sharing research data, enabling reproducibility and transparency in scientific investigations.
      brapibrapi-phenotypingbrapi-serverrocrate
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 5, 2024Sep 5, 2024

    • blast2galaxy

      Public
      A Python package providing a CLI and API to perform BLAST+ and DIAMOND queries against public or private Galaxy servers
      bioinformaticsblastgalaxygalaxy-projectbioinformatics-tool
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 3, 2024Sep 3, 2024

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.3k•0•0•0•Updated Sep 2, 2024Sep 2, 2024

    • scorpion

      Public
      Service Monitoring KPI Dashboard of NFDI4Biodiversity
      kpimonitoring-toolnfdinfdi4biodiversity
      Svelte
      •
      MIT License
      •0•3•2•0•Updated Aug 21, 2024Aug 21, 2024

    • divimpute

      Public
      Nextflow
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 13, 2024Mar 13, 2024

    • biosamples-tool

      Public
      A tool for convenient querying of the BioSamples database.
      Svelte
      •
      MIT License
      •0•0•0•0•Updated Jul 19, 2023Jul 19, 2023

    • divbrowse

      Public
      A web application for interactive visualization and exploratory data analysis of variant call matrices
      genomicsgff3vcfprincipal-component-analysisgenomics-visualizationgenomics-datagenomics-analysisvisualizationbioinformaticsdata-visualization
      Svelte
      •
      MIT License
      •3•16•5•0•Updated Jul 17, 2023Jul 17, 2023

    • isa-json2tab

      Public
      simple stateless backend to convert ISA-JSON to ISA-Tab
      Python
      •
      MIT License
      •1•0•0•0•Updated Jan 12, 2023Jan 12, 2023

    • isa4j

      Public
      Fast and Scalable Java Library for Writing ISA-Tab Files
      isaisatabbiohackeu21
      Java
      •
      MIT License
      •4•2•2•5•Updated Dec 8, 2022Dec 8, 2022