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    29 repositories

    • glimr_eu_infra

      Public
      A list of infrastructures for sharing human neuroimaging data for researchers based in the EU
      0•0•0•0•Updated Aug 8, 2025Aug 8, 2025

    • narps_open_pipelines

      Public
      A codebase reproducing the 70 pipelines of the NARPS study (Botvinik-Nezer et al., 2020) shared as an open resource for the community.
      Python
      •
      MIT License
      •23•9•65•25•Updated Jul 22, 2025Jul 22, 2025

    • neuro_variability_splc25

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 7, 2025Jul 7, 2025

    • fmri_feature_model

      Public
      Model the fMRI analytic space as feature model (FM)
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 7, 2025Jul 7, 2025

    • fmri-conf-runner

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • Anima-Public

      Public
      Open source software for medical image processing from the Empenn team
      C++
      •
      Other
      •34•41•3•3•Updated Apr 29, 2025Apr 29, 2025

    • Anima-Slides

      Public
      A repository to host tutorials, presentations and other material to promote the use of Anima, a C++ library with a set of Python scripts for medical image processing.
      HTML
      •
      GNU Affero General Public License v3.0
      •2•0•0•0•Updated Apr 29, 2025Apr 29, 2025

    • Anima-Tools

      Public
      A collection of tools, written in Python, to help with data conversion from/to Anima-compatible version
      Python
      •1•1•0•2•Updated Feb 12, 2025Feb 12, 2025

    • shanoir_downloader

      Public
      Scripts to download, check and anonymize datasets
      Python
      •
      GNU General Public License v3.0
      •4•3•7•4•Updated Feb 5, 2025Feb 5, 2025

    • reproducibility-biblio

      Public
      Resources on reproducibility (in neuroimaging)
      TeX
      •
      MIT License
      •3•1•20•0•Updated Oct 25, 2024Oct 25, 2024

    • SDMA

      Public
      Shared paper codes for SDMA2024 project
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 16, 2024Oct 16, 2024

    • paper-code-template

      Public
      HTML
      •0•0•0•0•Updated Oct 7, 2024Oct 7, 2024

    • spmbasics

      Public
      This the repo of spm tutorial pipelines reproduction
      Jupyter Notebook
      •
      MIT License
      •1•0•1•2•Updated Jul 12, 2024Jul 12, 2024

    • DVARS

      Public
      Insight & Inference for DVARS: 3-part variance decomposition, gives units & p-values to DVARS measures as well as spatiotemporal rs-fMRI diagnostic.
      MATLAB
      •
      MIT License
      •11•0•0•1•Updated Mar 25, 2024Mar 25, 2024

    • lesion_viewer

      Public
      CSS
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 25, 2024Jan 25, 2024

    • BEP028_BIDSprov

      Public
      Organizing and coordinating BIDS extension proposal 28 : BIDS Provenance
      Python
      •
      Creative Commons Attribution 4.0 International
      •12•0•6•0•Updated Apr 17, 2023Apr 17, 2023

    • motorrehabfmrimeta

      Public
      Code for Thomas Agasse-Lafont's internship. Meta-analysis of fMRI studies investigating motor rehabilitation.
      MIT License
      •1•0•0•0•Updated Mar 30, 2023Mar 30, 2023

    • EEG_preprocessing

      Public
      MATLAB
      •5•7•0•0•Updated Mar 15, 2023Mar 15, 2023

    • Anima-Scripts-Public

      Public
      Open source processing scripts using Anima tools
      Python
      •
      Other
      •8•0•1•0•Updated Oct 12, 2022Oct 12, 2022

    • anima.github.io

      Public
      Website for Anima
      HTML
      •0•0•0•0•Updated Jul 12, 2022Jul 12, 2022

    • Anima-Scripts-Data-Public

      Public
      Data for running all scripts in Anima scripts
      2•0•0•0•Updated Jul 12, 2022Jul 12, 2022

    • Stage

      Public
      MATLAB
      •0•0•0•0•Updated Sep 23, 2021Sep 23, 2021

    • lesion-segmentation-challenge-miccai21

      Public
      Python
      •3•1•0•0•Updated Sep 6, 2021Sep 6, 2021

    • pipelines

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 26, 2021May 26, 2021

    • nipype

      Public
      Workflows and interfaces for neuroimaging packages
      Python
      •
      Other
      •535•0•0•0•Updated Nov 19, 2019Nov 19, 2019

    • brainhackrennes

      Public
      Website for Brainhack Rennes 2019
      HTML
      •
      Apache License 2.0
      •5•0•15•0•Updated Nov 13, 2019Nov 13, 2019

    • QtShanoir

      Public
      QtShanoir
      C++
      •
      GNU Lesser General Public License v3.0
      •3•1•0•1•Updated Nov 4, 2019Nov 4, 2019

    • Docker_Music

      Public
      Dockerfile
      •2•0•0•0•Updated Sep 30, 2019Sep 30, 2019

    • RAWEB2018

      Public
      RAWEB: Annual activity report - 2018
      TeX
      •2•0•0•0•Updated Jan 10, 2019Jan 10, 2019