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    95 repositories

    • nnInteractive

      Public
      nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new standard in accuracy, usability, and adaptability for clinical and research applications.
      Python
      •
      Apache License 2.0
      •25•238•10•0•Updated Aug 1, 2025Aug 1, 2025

    • BreastDivider

      Public
      0•8•1•0•Updated Jul 31, 2025Jul 31, 2025

    • RTTB

      Public
      Swiss army knife for radiotherapy analysis
      dicom-rtradiotherapymedical-physicsanaylsisdosedose-statistics
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •9•30•1•0•Updated Jul 31, 2025Jul 31, 2025

    • napari-nninteractive

      Public
      Python
      •
      Apache License 2.0
      •12•90•9•2•Updated Jul 30, 2025Jul 30, 2025

    • confly

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 30, 2025Jul 30, 2025

    • LesionLocator

      Public
      LesionLocator is a framework for zero-shot lesion segmentation and longitudinal tumor tracking in 3D full-body imaging.
      trackingtumorsegmentation3dlesion
      Python
      •
      GNU General Public License v3.0
      •3•60•2•0•Updated Jul 28, 2025Jul 28, 2025

    • napari-data-inspection

      Public
      Python
      •
      Apache License 2.0
      •0•4•0•0•Updated Jul 16, 2025Jul 16, 2025

    • nnDetection-finetuning

      Public
      0•0•0•0•Updated Jul 15, 2025Jul 15, 2025

    • radtract

      Public
      RadTract: enhanced tractometry with radiomics-based imaging biomarkers for improved predictive modelling.
      Python
      •0•11•0•0•Updated Jul 14, 2025Jul 14, 2025

    • Skeleton-Recall

      Public
      Skeleton Recall Loss for Connectivity Conserving and Resource Efficient Segmentation of Thin Tubular Structures
      Python
      •
      Apache License 2.0
      •11•110•5•1•Updated Jul 11, 2025Jul 11, 2025

    • BodyPartRegression

      Public
      Python
      •
      Apache License 2.0
      •13•72•3•1•Updated Jul 11, 2025Jul 11, 2025

    • kaggle_BYU_Locating_Bacterial-Flagellar_Motors_2025_solution

      Public
      Python
      •
      Apache License 2.0
      •2•4•0•0•Updated Jul 11, 2025Jul 11, 2025

    • nnssl

      Public
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •11•73•6•6•Updated Jul 7, 2025Jul 7, 2025

    • nnUNet

      Public
      segmentation
      Python
      •
      Apache License 2.0
      •2.1k•7.1k•307•21•Updated Jul 3, 2025Jul 3, 2025

    • ScribbleBench

      Public
      [MICCAI 2025] Revisiting 3D Medical Scribble Supervision: Benchmarking Beyond Cardiac Segmentation
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Jul 2, 2025Jul 2, 2025

    • BraTPRO

      Public
      Python
      •
      Apache License 2.0
      •0•4•1•0•Updated Jul 1, 2025Jul 1, 2025

    • nnDetection

      Public
      nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.
      medical-imagingmedical-image-computing3d-object-detectionpytorch-implementationretina-unetdetectionmedical
      Python
      •
      Apache License 2.0
      •110•595•22•3•Updated Jun 26, 2025Jun 26, 2025

    • dynamic-network-architectures

      Public
      Python
      •
      Apache License 2.0
      •48•114•5•1•Updated Jun 25, 2025Jun 25, 2025

    • MultiTalent

      Public
      Implemention of the Paper "MultiTalent: A Multi-Dataset Approach to Medical Image Segmentation"
      Python
      •
      Apache License 2.0
      •3•60•2•0•Updated Jun 24, 2025Jun 24, 2025

    • LongiSeg

      Public
      Python
      •
      Apache License 2.0
      •2•25•5•0•Updated Jun 23, 2025Jun 23, 2025

    • VPE-in-Radiology

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 10, 2025Jun 10, 2025

    • batchgeneratorsv2

      Public
      Python
      •
      Apache License 2.0
      •13•24•0•3•Updated Jun 2, 2025Jun 2, 2025

    • deki-smpc

      Public
      Python
      •
      Apache License 2.0
      •0•4•0•0•Updated May 29, 2025May 29, 2025

    • deki-smpc-server

      Public
      Python
      •
      Apache License 2.0
      •0•3•0•0•Updated May 29, 2025May 29, 2025

    • miccai2024_midi-b-submission

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•5•0•0•Updated Apr 29, 2025Apr 29, 2025

    • Temporal-Flow-Matching

      Public
      0•0•0•0•Updated Apr 28, 2025Apr 28, 2025

    • napari_toolkit

      Public
      Python
      •
      Apache License 2.0
      •3•4•0•1•Updated Apr 25, 2025Apr 25, 2025

    • radioactive

      Public
      Python
      •
      Creative Commons Attribution 4.0 International
      •1•6•1•0•Updated Apr 15, 2025Apr 15, 2025

    • ssl3d

      Public
      Apache License 2.0
      •0•4•0•0•Updated Apr 14, 2025Apr 14, 2025

    • MatchPoint

      Public
      MatchPoint is a translational image registration framework written in C++. It offers a standardized interface to utilize several registration algorithm resources (like ITK, plastimatch, elastix) easily in a host application.
      C++
      •3•4•0•0•Updated Apr 10, 2025Apr 10, 2025