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    16 repositories

    • pi-PrimeNovo

      Public
      Python
      •
      MIT License
      •3•15•0•0•Updated Jan 10, 2025Jan 10, 2025

    • pi-HelixNovo

      Public
      Python
      •
      GNU General Public License v3.0
      •0•10•0•0•Updated Sep 24, 2024Sep 24, 2024

    • Panda-UV

      Public
      Python
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Aug 5, 2024Aug 5, 2024

    • CellDecoder

      Public
      Cell Decoder: Decoding cell identity with multi-scale explainable deep learning
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • deeprtalign

      Public
      a deep learning-based retention time alignment tool for large cohort LC-MS data analysis
      Python
      •
      GNU General Public License v3.0
      •0•11•2•0•Updated Dec 6, 2023Dec 6, 2023

    • REAL-XType

      Public
      Python
      •0•1•0•0•Updated Sep 15, 2023Sep 15, 2023

    • EnrichMiner

      Public
      A biologist-oriented web server for mining biological insights from functional enrichment analysis
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 1, 2023Jul 1, 2023

    • MSnet

      Public
      A large open benchmark dataset for computational proteomics
      GNU General Public License v3.0
      •3•1•0•0•Updated Jun 21, 2023Jun 21, 2023

    • MAGNIFinder

      Public
      A software tool for 6-plex mdSUGAR tag labeled glycan peak pattern recognition automatically
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Apr 24, 2023Apr 24, 2023

    • SerumStudyOfLiverDiseases

      Public
      Code of feature selection and machine learning modeling of a serum proteomics study
      Python
      •
      GNU Affero General Public License v3.0
      •1•1•0•0•Updated Feb 28, 2023Feb 28, 2023

    • SRPS

      Public
      Python
      •0•0•0•0•Updated Aug 11, 2022Aug 11, 2022

    • NeuCodeFinder

      Public
      A software tool for screening for the NeuCode signature in MS full scans
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 22, 2022Jul 22, 2022

    • TumorClassifier

      Public
      Python
      •
      GNU General Public License v3.0
      •2•2•0•0•Updated May 2, 2020May 2, 2020

    • MS2SpectraPredictionEvaluation

      Public
      A systematic evaluation and comparison of MS2 spectra prediction tools
      Python
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Apr 30, 2020Apr 30, 2020

    • IsoErrorAnalysis

      Public
      The tool IsoErrorAnalysis is developed and used to calculate the peptide isotopic abundance error in MS data. It was used in the paper "Quantitative and in-depth survey of the isotopic abundance distribution errors in shotgun proteomics" (Anal Chem, 2016, 88: 6844-6851)
      GNU General Public License v3.0
      •0•1•0•0•Updated Aug 31, 2017Aug 31, 2017

    • tensorflow

      Public
      Computation using data flow graphs for scalable machine learning
      C++
      •
      Apache License 2.0
      •74k•0•0•0•Updated Mar 23, 2017Mar 23, 2017