Refractive Index Imaging

All

16 repositories

ODTbrain
Public
Python library for diffraction tomography with the Born and Rytov approximations
backpropagation biophysics diffraction-tomography single-cell-imaging
Python
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BSD 3-Clause "New" or "Revised" License
•12•51•7•0•Updated Mar 31, 2025Mar 31, 2025
nrefocus
Public
python library for numerical focusing (refocusing, autofocusing) of complex wave fields
microscopy biophysics holography quantitative-phase-imaging numerical-focusing autofocusing
Python
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BSD 3-Clause "New" or "Revised" License
•4•8•9•0•Updated Mar 31, 2025Mar 31, 2025
qpretrieve
Public
Phase retrieval from holograms
Python
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MIT License
•2•4•8•1•Updated Feb 25, 2025Feb 25, 2025
qpformat
Public
Python library for opening quantitative phase imaging file formats
python file-format microscopy holography quantitative-phase-imaging
Python
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MIT License
•2•1•3•0•Updated Feb 7, 2025Feb 7, 2025
flimage
Public
Python library for manipulating fluorescence microscopy series data
Python
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MIT License
•2•0•1•0•Updated Feb 7, 2025Feb 7, 2025
CellReel
Public
graphical user interface for refractive index and fluorescence tomography
Python
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GNU General Public License v3.0
•0•1•15•0•Updated Feb 6, 2025Feb 6, 2025
cellsino
Public
Python library for generating sinograms (phase and fluorescence) of cell phantoms for testing tomographic reconstruction algorithms
Python
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BSD 3-Clause "New" or "Revised" License
•2•4•4•0•Updated Feb 6, 2025Feb 6, 2025
DryMass
Public
manipulation and analysis of phase microscopy data
microscopy holography cell-analysis refractive-index quantitative-phase-imaging
Python
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MIT License
•1•3•5•0•Updated Feb 6, 2025Feb 6, 2025
qpsphere
Public
Python library for spheres in quantitative phase imaging
microscopy phython holography refractive-index quantitative-phase-imaging digital-holographic-microscopy single-cell-analysis
Python
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MIT License
•2•5•4•0•Updated Feb 6, 2025Feb 6, 2025
radontea
Public
python library for tomographic image reconstruction
tomography backprojection radon-transform
Python
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BSD 3-Clause "New" or "Revised" License
•8•16•1•0•Updated Feb 6, 2025Feb 6, 2025
qpimage
Public
Python library for manipulating quantitative phase images
python microscopy holography quantitative-phase-imaging electron-holography digital-holographic-microscopy
Python
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MIT License
•4•0•3•0•Updated Feb 6, 2025Feb 6, 2025
FDTD_sinogram
Public
C++ scripts and Python wrappers for diffraction-tomographic sinogram generation using MEEP
Python
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BSD 3-Clause "New" or "Revised" License
•3•3•1•0•Updated Jun 29, 2020Jun 29, 2020
QPI-data
Public archive
example data for quantitative phase imaging
2•0•0•0•Updated Sep 19, 2019Sep 19, 2019
bornscat
Public archive
python library to compute forward scattering with the Born and Rytov approximations
Python
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BSD 3-Clause "New" or "Revised" License
•4•8•0•0•Updated Feb 4, 2019Feb 4, 2019
QPI-binaries
Public
Binaries of programs useful in quantitative phase imaging
Shell
•0•0•0•0•Updated Dec 8, 2017Dec 8, 2017
miefield
Public archive
python library to compute near field behind cylindrical scatterers using Mie theory
Python
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BSD 3-Clause "New" or "Revised" License
•3•2•1•0•Updated Jul 28, 2017Jul 28, 2017