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@ReproNim Center for Reproducible Neuroimaging Computation

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    106 repositories

    • repronim.org

      Public
      WiP for a replacement website
      HTML
      •
      MIT License
      •6•0•45•5•Updated Jul 30, 2025Jul 30, 2025

    • reproschema-protocol-cookiecutter

      Public
      A cookiecutter for reproschema protocols.
      Python
      •1•0•1•1•Updated Jul 30, 2025Jul 30, 2025

    • reprostim

      Public
      Automated capture of audio-visual stimuli into BIDS datasets
      reproducible-researchpsychologyneuroimaging
      Python
      •4•6•41•0•Updated Jul 30, 2025Jul 30, 2025

    • ReproInventory

      Public
      A repo for developing the ReproNim inventory of training resources.
      TypeScript
      •
      MIT License
      •6•4•4•0•Updated Jul 29, 2025Jul 29, 2025

    • reprozip

      Public
      ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •36•1•0•0•Updated Jul 29, 2025Jul 29, 2025

    • repronim.github.io

      Public
      HTML
      •
      GNU General Public License v3.0
      •11•3•24•0•Updated Jul 29, 2025Jul 29, 2025

    • containers

      Public
      Containers "distribution" for reproducible neuroimaging
      Roff
      •
      Apache License 2.0
      •16•27•39•3•Updated Jul 29, 2025Jul 29, 2025

    • reproschema-server

      Public
      Python
      •
      MIT License
      •1•0•0•1•Updated Jul 28, 2025Jul 28, 2025

    • neurodocker

      Public
      Generate custom Docker and Singularity images, and minimize existing containers
      linuxsciencedockerfilereproducible-researchcontainersneurosciencesingularity-containernipypeapptainerdocker
      Python
      •
      Apache License 2.0
      •96•348•9•3•Updated Jul 28, 2025Jul 28, 2025

    • reproschema-ui

      Public
      UI to render ReproSchema based protocols and assessments.
      hacktoberfestjsonldform-ui
      Vue
      •
      Other
      •20•3•46•4•Updated Jul 27, 2025Jul 27, 2025

    • reproschema2cde

      Public
      Python
      •
      MIT License
      •1•0•1•0•Updated Jul 27, 2025Jul 27, 2025

    • reproschema-demo-protocol

      Public
      A demo protocol for the ReproSchema paper
      Makefile
      •
      MIT License
      •0•0•0•0•Updated Jul 27, 2025Jul 27, 2025

    • reproschema-agents

      Public
      multi-agent framework for reproschema
      MIT License
      •1•0•0•0•Updated Jul 27, 2025Jul 27, 2025

    • reproschema-library

      Public
      Python
      •
      Apache License 2.0
      •12•6•5•0•Updated Jul 27, 2025Jul 27, 2025

    • reproschema-py

      Public
      Python
      •
      Apache License 2.0
      •9•2•15•5•Updated Jul 27, 2025Jul 27, 2025

    • reproschema

      Public
      A standardized form generation and data collection schema to harmonize results by design across projects.
      schemainteroperabilitystandardizing-assessmentsclinical-assessments
      Python
      •
      Other
      •24•18•15•5•Updated Jul 27, 2025Jul 27, 2025

    • FAIR_neuroimaging_with_NIDM

      Public
      FAIR neuroimaging with the Neuroimaging Data Model and PyNIDM
      Shell
      •0•0•0•0•Updated Jul 9, 2025Jul 9, 2025

    • stuff2NIDM

      Public
      Repo for the process of adding "stuff" (ie the results of fmriprep, etc. processing) to the NIDM graph.
      Python
      •
      MIT License
      •2•1•0•1•Updated Jul 2, 2025Jul 2, 2025

    • babs-demo-ohbm2025

      Public
      A demo for OHBM 2025 educational course on BABS
      Python
      •
      MIT License
      •1•3•0•0•Updated Jun 23, 2025Jun 23, 2025

    • hbcd-redcap2rs

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 1, 2025Jun 1, 2025

    • hbcd-loris2reproschema

      Public
      HBCD LORIS format to ReproSchema format
      1•0•0•1•Updated May 23, 2025May 23, 2025

    • OpenNeuroDerivatives-NIDM

      Public
      Dockerfile
      •0•1•5•0•Updated May 19, 2025May 19, 2025

    • SumarizeFmriprep

      Public
      A script to generate a session summary from a fmriprep* (fmriprep-babies, nibabies, fmriprep, etc.) analysis
      Shell
      •
      MIT License
      •1•0•4•0•Updated May 19, 2025May 19, 2025

    • reproin

      Public
      A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners
      Shell
      •
      MIT License
      •15•49•39•1•Updated May 12, 2025May 12, 2025

    • module-intro

      Public
      Module i: An Introduction to Reproducible Neuroimaging training module
      JavaScript
      •
      Other
      •4•0•3•0•Updated May 9, 2025May 9, 2025

    • reproflow-data-sync

      Public
      DataLad dataset with all samples of recorded "ReproEvents", "ReproStim", etc data for purpose of calibration and establishing processing
      Python
      •1•0•0•1•Updated May 7, 2025May 7, 2025

    • simple2_NIDM_examples

      Public
      ReproNim simple2 NIDM files for ABIDE/ADHD200 available from datalad
      Python
      •15•3•2•2•Updated Apr 18, 2025Apr 18, 2025

    • hbcd-redcap2rs_old

      Public archive
      this repo is archived, please go to https://github.com/ReproNim/hbcd-redcap2rs for the most updated information
      Python
      •1•0•1•1•Updated Mar 26, 2025Mar 26, 2025

    • artwork

      Public
      Some artwork (logos etc)
      R
      •
      MIT License
      •2•0•2•0•Updated Mar 26, 2025Mar 26, 2025

    • reproschema-diff

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 4, 2025Mar 4, 2025