Repositories list

• aeon_scratchpad

  Public
  Data Analysis code for Project Aeon

  BSD 3-Clause "New" or "Revised" License

  •0•0•3•0•Updated May 8, 2025May 8, 2025

• arduino_code_club

  Public
  Learn how to code with an Arduino and structure your electronic circuits for all your project needs!

  C++

  •0•0•0•0•Updated May 7, 2025May 7, 2025

• NeuralPlayground

  Public
  The standardised environment for the hippocampus and entorhinal cortex models

  Python

  •

  Other

  •6•69•10•2•Updated May 6, 2025May 6, 2025

• pcb_thermistor_amplifier

  Public
  0•0•0•0•Updated May 2, 2025May 2, 2025

• aeon_experiments

  Public
  Experiment workflows for Project Aeon

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•3•99•3•Updated Apr 30, 2025Apr 30, 2025

• aeon_sleap_processing

  Public
  Project Aeon computational data pipeline for post-process refinement of SLEAP data using zoomed in cameras.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•1•Updated Apr 29, 2025Apr 29, 2025

• rc2_matlab

  Public
  Software to control the Translocator (ex rollercoaster) hardware

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•0•0•Updated Apr 29, 2025Apr 29, 2025

• crabs-exploration

  Public
  A toolkit for detecting and tracking crabs in the field.

  computer-visionobject-detectionneuroinformatics+ 4computer-vision-toolsanimal-behaviourcrabsvideo-processing-pipeline

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•7•44•10•Updated Apr 28, 2025Apr 28, 2025

• aeon_mecha

  Public
  Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.

  python

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •6•6•52•2•Updated Apr 28, 2025Apr 28, 2025

• aeon_docs

  Public
  Online docs repo for Project Aeon.

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •2•2•26•3•Updated Apr 14, 2025Apr 14, 2025

• aeon_api

  Public
  Project Aeon low-level library for interfacing with acquired data. Contains modules for raw data file io, data querying, and data processing.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•2•1•Updated Apr 9, 2025Apr 9, 2025

• aeon_feeder_v2

  Public
  Python

  •

  Other

  •0•0•0•0•Updated Apr 1, 2025Apr 1, 2025

• SJLab_APE_paper

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Apr 1, 2025Apr 1, 2025

• aeon_template

  Public
  C#

  •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

• sequences_neuropixel_preprocess

  Public
  pre-processing scripts for neuropixels data for the sequence project

  Jupyter Notebook

  •1•1•0•0•Updated Mar 10, 2025Mar 10, 2025

• rc2_figures

  Public
  First version of figures for the roller coaster project

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 26, 2025Feb 26, 2025

• sequences_run_PPseq

  Public
  Preparing data for and running PPseq for the sequences project

  Jupyter Notebook

  •1•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• neuroPico

  Public
  MicroPython Library for NeuroPico

  Python

  •

  Other

  •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• microharp

  Public
  A Harp protocol and device application framework micropython package.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•4•0•1•Updated Feb 12, 2025Feb 12, 2025

• lasagna

  Public
  3-D imaging visualisation through slicing

  neuroscienceregistrationanatomy+ 2pythonpyqtgraph

  Python

  •

  GNU General Public License v3.0

  •7•29•103•0•Updated Jan 14, 2025Jan 14, 2025

• rc2_analysis

  Public
  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•0•0•Updated Jan 13, 2025Jan 13, 2025

• sequences_histology

  Public
  histology plots for sequences project

  Jupyter Notebook

  •1•1•0•0•Updated Dec 24, 2024Dec 24, 2024

• sequences_behaviour

  Public
  scripts for running and post-hoc analysis of the 8 poke sequence behavioural task

  Jupyter Notebook

  •3•1•0•0•Updated Dec 23, 2024Dec 23, 2024

• rc2_vr

  Public
  Library to handle VR in the translocator setup

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• rc2_visual_stimuli

  Public
  Visual stimuli for translocator setup

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• rc2_analysis_videos

  Public
  Matlab scripts to analyse behavioural data using the cameras as data source.

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• sleep-stage-transition

  Public
  Code to replicate results for sleep stages transitions in small network. Reference: Cellular and neurochemical basis of sleep stages in the thalamocortical network eLife 5:e18607. https://doi.org/10.7554/eLife.18607

  C++

  •4•0•0•0•Updated Nov 24, 2024Nov 24, 2024

• FNT_probe_localization

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• aeon_acquisition

  Public
  Task control and acquisition systems for Project Aeon.

  C#

  •

  BSD 3-Clause "New" or "Revised" License

  •4•6•6•2•Updated Nov 1, 2024Nov 1, 2024

• aeon_schema

  Public
  A library that defines Project Aeon reusable JSON data schemas

  0•0•0•0•Updated Oct 23, 2024Oct 23, 2024