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    27 repositories

    • CAD_meta_prediction

      Public
      Machine learning pipeline for meta-prediction of coronary artery disease
      Python
      •
      MIT License
      •0•1•0•0•Updated Aug 21, 2024Aug 21, 2024

    • Genotype_Imputation_Pipeline

      Public
      Final version of the pipeline for processing TOPMED and other dbGaP datasets, includes: automatic identification of reference genome build and selection of correct chain file, mapping to GRCh37 reference build, initial quality control, ancestry analysis, post-ancestry quality control, phasing, imputation, post-imputation quality control.
      FreeBasic
      •6•9•0•0•Updated Jul 31, 2024Jul 31, 2024

    • Cardiomyopathy_GeoMxDSP

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 1, 2024Jun 1, 2024

    • Genome-Tiling

      Public
      A Set of R Tools for Splitting up Chromosomes into Regions of High and Low Recombination
      Jupyter Notebook
      •0•1•0•0•Updated Apr 28, 2024Apr 28, 2024

    • zoish

      Public
      Zoish is a Python package that streamlines machine learning by leveraging SHAP values for feature selection and interpretability, making model development more efficient and user-friendly
      pythondata-sciencemachine-learningscikit-learnfeature-selectionfeature-engineeringautoml
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•11•2•0•Updated Feb 7, 2024Feb 7, 2024

    • lohrasb

      Public
      This versatile tool streamlines hyperparameter optimization in machine learning workflows.
      Python
      •
      BSD 2-Clause "Simplified" License
      •2•5•1•0•Updated Sep 9, 2023Sep 9, 2023

    • frequency_analyzer

      Public
      A command-line tool for isolating frequencies found in accelerometer data.
      Python
      •5•1•1•1•Updated Jul 6, 2023Jul 6, 2023

    • imputator_inference

      Public
      Python
      •
      MIT License
      •2•2•2•0•Updated Jan 16, 2023Jan 16, 2023

    • metapipe

      Public
      A pipeline generator and runtime system
      Python
      •
      MIT License
      •4•13•5•3•Updated Dec 26, 2022Dec 26, 2022

    • ncbi-scraper

      Public
      A python library for parsing data from NCBI website
      Python
      •1•0•0•2•Updated Dec 8, 2022Dec 8, 2022

    • Imputation_Autoencoder

      Public
      Deep learning algorithm for imputation of genetic variants
      Jupyter Notebook
      •6•3•0•0•Updated Nov 28, 2022Nov 28, 2022

    • Carotid.Art.Dis.scRNA_Seq

      Public
      Code Files For Analyzing 3 Patient Carotid Artery Single Cell RNA-Seq Experiment
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Sep 9, 2022Sep 9, 2022

    • python_data_science_internship

      Public
      Python learning for data science on analyzing the speed and accuracy of the imputation model (autoencoder)
      Jupyter Notebook
      •0•0•0•0•Updated Dec 29, 2021Dec 29, 2021

    • imputation_accuracy_calculator

      Public
      Python
      •
      MIT License
      •5•16•3•0•Updated Dec 15, 2021Dec 15, 2021

    • scripps-auth

      Public
      A simple key-pair-based token authentication library
      JavaScript
      •0•0•0•0•Updated Sep 6, 2020Sep 6, 2020

    • dsc80-fa19

      Public
      DSC 80 Fall 19 Public repo
      Jupyter Notebook
      •25•0•0•0•Updated Nov 5, 2019Nov 5, 2019

    • AncestryDNA-to-vcf

      Public
      Contains Public Ancestry DNA Raw File, Ancestry Conversion Code, and the .vcf Converted Output File
      Jupyter Notebook
      •1•0•0•0•Updated Nov 3, 2019Nov 3, 2019

    • slack-hubot-docker

      Public
      Docker image for running Hubot with Slack
      slackdevops
      CoffeeScript
      •1•1•0•0•Updated May 23, 2019May 23, 2019

    • bhuvan-s_utilities

      Public
      Python
      •1•0•0•0•Updated Oct 4, 2017Oct 4, 2017

    • rna_seq

      Public
      script to run rna seq tools
      Shell
      •0•0•0•0•Updated Sep 21, 2017Sep 21, 2017

    • charts

      Public
      Python
      •2•0•0•0•Updated Jan 19, 2017Jan 19, 2017

    • sparse.cor

      Public
      R package for calculating sparse correlations
      R
      •0•0•0•0•Updated Dec 12, 2016Dec 12, 2016

    • gadget-pipeline

      Public
      An analysis pipeline used to classify ET vs. PD tremor based on wrist-mounted accelerometer data.
      Shell
      •2•0•0•0•Updated Mar 30, 2016Mar 30, 2016

    • SG-ADVISER_UI

      Public
      Java
      •0•0•0•0•Updated Oct 15, 2014Oct 15, 2014

    • FPR

      Public
      Functional Programming in R
      R
      •0•0•0•0•Updated Sep 25, 2014Sep 25, 2014

    • genomic.kernels

      Public
      Kernels for Genomic Data
      R
      •0•0•0•0•Updated Sep 25, 2014Sep 25, 2014

    • CEC

      Public
      R scripts for circulating endothelial project
      R
      •0•0•0•0•Updated Sep 25, 2014Sep 25, 2014